View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18682_low_6 (Length: 404)
Name: NF18682_low_6
Description: NF18682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18682_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 31 - 391
Target Start/End: Complemental strand, 22006550 - 22006191
Alignment:
| Q |
31 |
cagtaaataattcaaccgcttcaatgaacagcaaatgtaaacctggaataatttcccaagtccatagtcagtgatgttggttttccgatggattgtgcat |
130 |
Q |
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| T |
22006550 |
cagtaaataatttaaccgcttcgatgaacagcaaatgtaaacctggaataatttcc-aagtccatagtcagtgatgttggtttgccgatggatggtgcat |
22006452 |
T |
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| Q |
131 |
atcccggtcctggttgcacaattggagctgatctttatgatccagatcaaccactgtggattgatagaggtttggaatcttcaaatgtgctcctaaatat |
230 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||| |||||||| |
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| T |
22006451 |
atcccggtcctggttgcacaagtggagctgatctttatgatccagatcaaccactgtggaatgatagaggtctggaatcttcaaatgcgcttctaaatat |
22006352 |
T |
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| Q |
231 |
gcagtcgtcaaagattgatgatgccgggcctatgtctagcgacgctccaaataatgtttgtccagttgaagctaccagaacttctgtcaatttacatggt |
330 |
Q |
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|||||| || |||||||||||||| | |||||||||||| || |||||||||| ||||||||| |||||||||||||||||||| || |||||| ||| |
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| T |
22006351 |
gcagtcatcgaagattgatgatgctgagcctatgtctagtgatgctccaaatagagtttgtccaagtgaagctaccagaacttctggcagtttacacggt |
22006252 |
T |
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| Q |
331 |
gccaattcatctgtctggggcagaattggtggttcaaaaaatagatttgacaccgaaagaa |
391 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||| |
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| T |
22006251 |
gccagttcatctgtctggggcagaattggtggttcaaaaactagattttacaccaaaagaa |
22006191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 17 - 391
Target Start/End: Original strand, 22037893 - 22038262
Alignment:
| Q |
17 |
tggatcactacatgcagtaaataattcaaccgcttcaatgaacagcaaatgtaaacctggaataatttcccaagtccatagtcagtgatgttggttttcc |
116 |
Q |
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| T |
22037893 |
tggatcaccacattcagtaaataatttatca-ctttgatgaacatcaaatgtaaacctggaataatttcc-aagtccatagtcagtgatggttgtttgcc |
22037990 |
T |
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| Q |
117 |
gatggattgtgcatatcccggtcctggttgcacaattggagctgatctttatgatccagatcaaccactgtggattgatagaggtttggaatcttcaaat |
216 |
Q |
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||| || |||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| | || ||||| |||| |||||| ||||||| |
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| T |
22037991 |
aatgaatggtgcatatcccgatcctgattgcacaagtggagctgatctttatgatccagatcaaccactattgaatgataaaggtctggaattttcaaat |
22038090 |
T |
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| Q |
217 |
gtgctcctaaatatgcagtcgtcaaagattgatgatgccgggcctatgtctagcgacgctccaaataatgtttgtccagttgaagctaccagaacttctg |
316 |
Q |
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| T |
22038091 |
gcgctcctaa--atgcagtcatcgaagattgatgatgccgagcctatgtctagtgatgctccaaatagtgtttttcaagttgaagctaccagaacttctg |
22038188 |
T |
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| Q |
317 |
tcaatttacatggtgccaattcatctgtctggggcagaattggtggttcaaaaaatagatttgacaccgaaagaa |
391 |
Q |
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||| |||||| |||||| ||||||||| | |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
22038189 |
tcagtttacagtgtgccagttcatctgtat-aggcataattggtggttcaaaaaatagatttgacaccgaaagaa |
22038262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 539246 - 539434
Alignment:
| Q |
17 |
tggatcactacatgcagtaaataattcaaccgcttcaatgaacagcaaatgtaaacctggaataatttcccaagtccatagtcagtgatgttggttttcc |
116 |
Q |
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||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| | |
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| T |
539246 |
tggatcactgcattcagtaaataattcaactgcttcaatgaacagcaaatgtaaacctggaataatttcc-aagtccattgtcagtgatgttggttcgtc |
539344 |
T |
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| Q |
117 |
gatggattgtgcatatcccggtcctggttgcacaattggagctgatctttatgatccagatcaaccactgtggattgatagaggtttgga |
206 |
Q |
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||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||| |||| |
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| T |
539345 |
gatggatggtgcatatcccggtcctggttgcacaagtggagctgatctttatgatccagatcaaccactgtggaatgataggggtctgga |
539434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 242 - 383
Target Start/End: Original strand, 539434 - 539575
Alignment:
| Q |
242 |
agattgatgatgccgggcctatgtctagcgacgctccaaataatgtttgtccagttgaagctaccagaacttctgtcaatttacatggtgccaattcatc |
341 |
Q |
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|||| |||||||| | |||||||||||| || |||||| ||| ||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||| |
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| T |
539434 |
agatcgatgatgctgagcctatgtctagtgatgctccagatagtgtttgtccagttgaagctaccagaacttctgtcagtttacagggtgccagttcatc |
539533 |
T |
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| Q |
342 |
tgtctggggcagaattggtggttcaaaaaatagatttgacac |
383 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |
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| T |
539534 |
tgtctggggcagaattggtggttcaaaaaatagattcgacac |
539575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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