View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18682_low_8 (Length: 357)

Name: NF18682_low_8
Description: NF18682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18682_low_8
NF18682_low_8
[»] chr7 (6 HSPs)
chr7 (1-336)||(44673982-44674317)
chr7 (31-139)||(26401853-26401961)
chr7 (59-124)||(48768381-48768446)
chr7 (204-280)||(40064706-40064782)
chr7 (21-136)||(8863938-8864053)
chr7 (51-136)||(5612532-5612617)
[»] chr8 (6 HSPs)
chr8 (16-279)||(9529683-9529949)
chr8 (16-143)||(36307751-36307878)
chr8 (22-80)||(13813385-13813443)
chr8 (68-121)||(21278019-21278072)
chr8 (48-136)||(25750324-25750412)
chr8 (237-316)||(35364636-35364712)
[»] chr3 (6 HSPs)
chr3 (16-320)||(44493434-44493741)
chr3 (22-135)||(19822666-19822779)
chr3 (18-142)||(54563265-54563389)
chr3 (21-100)||(4485684-4485763)
chr3 (46-136)||(14505598-14505688)
chr3 (48-136)||(34933498-34933586)
[»] chr1 (2 HSPs)
chr1 (16-263)||(38490493-38490743)
chr1 (207-295)||(9927476-9927564)
[»] chr6 (4 HSPs)
chr6 (24-130)||(11605886-11605992)
chr6 (237-315)||(21976303-21976381)
chr6 (27-112)||(18689563-18689648)
chr6 (68-136)||(15925158-15925226)
[»] chr2 (2 HSPs)
chr2 (59-123)||(11551699-11551763)
chr2 (59-124)||(45013600-45013665)
[»] scaffold0114 (1 HSPs)
scaffold0114 (48-136)||(13160-13248)
[»] chr5 (2 HSPs)
chr5 (27-118)||(19233903-19233994)
chr5 (22-142)||(22787800-22787920)
[»] chr4 (1 HSPs)
chr4 (1-112)||(12353444-12353555)


Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 44673982 - 44674317
Alignment:
Q  1 tgattgggaggaaccgaacaaccacctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcagcaagtgtttgtccaaggcagggcg 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  44673982 tgattaggaggaaccgaacaaccacctttgcttacattaaagatcgggtgtggcaaagattaaattcttggagcagcaagtgtttgtccaaggtagggcg 44674081  T
Q  101 cgaagttatgatcaaatcggttcttcaagccattccctcctacatgagtttgtttcatttaccgtcaacgctaatcactactattgagtgtatgataaac 200  Q
    | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44674082 caaagttatgatcaagtcggttcttcaagccattccctcctacatgagtttgtttcatttaccgtcaacgctgatcactactattgagtgtatgataaac 44674181  T
Q  201 acgttctggtggggccatggtagaactaatcaccaaggtatcaattggctgagttgggaaaagttatcaatgcataaaaaatacggtggcatggggttta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44674182 acgttctggtggggccatggtagaactaatcaccaaggtatcaattggctgagttgggaaaagttatcaatgcataaaaaatacggtggcatggggttta 44674281  T
Q  301 aggacctctcaactttcaatatcgatgtgaggcaag 336  Q
    ||||||||||| ||||||||||||||||||||||||    
T  44674282 aggacctctcagctttcaatatcgatgtgaggcaag 44674317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 31 - 139
Target Start/End: Original strand, 26401853 - 26401961
Alignment:
Q  31 cttacattaaagatcgggtgtggcaaagaataaattcttggagcagcaagtgtttgtccaaggcagggcgcgaagttatgatcaaatcggttcttcaagc 130  Q
    |||||||||| || ||||| ||||||||||| || || ||||| ||||||||||||||||| ||||||||||| ||||||||||| || |  ||||||||    
T  26401853 cttacattaaggaccgggtttggcaaagaattaactcatggagtagcaagtgtttgtccaaagcagggcgcgaggttatgatcaagtcagcccttcaagc 26401952  T
Q  131 cattccctc 139  Q
    |||||||||    
T  26401953 cattccctc 26401961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 124
Target Start/End: Original strand, 48768381 - 48768446
Alignment:
Q  59 aataaattcttggagcagcaagtgtttgtccaaggcagggcgcgaagttatgatcaaatcggttct 124  Q
    ||||||||||||||| || || ||||| || |||||||||||||| |||||||||||||| |||||    
T  48768381 aataaattcttggagtagtaattgtttatctaaggcagggcgcgaggttatgatcaaatccgttct 48768446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 40064782 - 40064706
Alignment:
Q  204 ttctggtggggccatggtagaactaatcaccaaggtatcaattggctgagttgggaaaagttatcaatgcataaaaa 280  Q
    ||||||||||| ||||||||||| || || || |||||||||||||| | |||||| ||| |||| |||||||||||    
T  40064782 ttctggtggggtcatggtagaacaaaccagcacggtatcaattggctaaattgggagaagctatctatgcataaaaa 40064706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 136
Target Start/End: Complemental strand, 8864053 - 8863938
Alignment:
Q  21 accacctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcagcaagtgtttgtccaaggcagggcgcgaagttatgatcaaatcgg 120  Q
    ||||||||| |||| ||||| || || ||||||||||| |||||||||||||| ||||||||  | || |||||| | || ||  ||||||| || || |    
T  8864053 accaccttttcttatattaaggaccgtgtgtggcaaaggataaattcttggagtagcaagtgcctctcaaaggcacgacgggagtttatgattaagtctg 8863954  T
Q  121 ttcttcaagccattcc 136  Q
    |||| |||||||||||    
T  8863953 ttctacaagccattcc 8863938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 136
Target Start/End: Complemental strand, 5612617 - 5612532
Alignment:
Q  51 tggcaaagaataaattcttggagcagcaagtgtttgtccaaggcagggcgcgaagttatgatcaaatcggttcttcaagccattcc 136  Q
    ||||||| ||||| |  |||||| || || ||||||||||| |||||  | || |||||||||||||| ||||||||||| |||||    
T  5612617 tggcaaaaaataagtagttggagtagtaaatgtttgtccaaagcaggtagagaggttatgatcaaatctgttcttcaagctattcc 5612532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 16 - 279
Target Start/End: Original strand, 9529683 - 9529949
Alignment:
Q  16 gaacaaccacctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcagcaagtgtttgtccaaggcagggcgcgaagttatgatcaa 115  Q
    |||||||||| |||||||||||||| ||||| || ||||||||||| || || ||||| ||||||||||||||||||||| ||  ||| |||||||||||    
T  9529683 gaacaaccacatttgcttacattaaggatcgagtttggcaaagaattaactcatggagtagcaagtgtttgtccaaggcaaggtacgaggttatgatcaa 9529782  T
Q  116 atcggttcttcaagccattccctccta---catgagtttgtttcatttaccgtcaacgctaatcactactattgagtgtatgataaacacgttctggtgg 212  Q
     || || ||||||||||||||||| ||    |||||| ||| ||| ||||| || ||| ||||||||| ||| ||  | ||||| ||||| || ||| ||    
T  9529783 gtcagtccttcaagccattccctcatatgttatgagtctgtatcagttaccctccacgttaatcactaatatcgaacgaatgatgaacacattttggagg 9529882  T
Q  213 ggccatggtagaactaatcaccaaggtatcaattggctgagttgggaaaagttatcaatgcataaaa 279  Q
    || ||||| || ||||| ||    || ||||||| | |||||||||||||||| || ||||||||||    
T  9529883 gggcatggcagcactaaccataggggcatcaatttgttgagttgggaaaagttgtcgatgcataaaa 9529949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 36307878 - 36307751
Alignment:
Q  16 gaacaaccacctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcagcaagtgtttgtccaaggcagggcgcgaagttatgatcaa 115  Q
    ||||| |||| |||||||| ||||| ||||| ||||||||||| || ||||||||||| || |||||| | || || ||||| || ||||||||||| ||    
T  36307878 gaacatccacttttgcttatattaaggatcgtgtgtggcaaaggattaattcttggagtagtaagtgtctctctaaagcaggtcgggaagttatgataaa 36307779  T
Q  116 atcggttcttcaagccattccctcctac 143  Q
     || ||||| ||||||||||| ||||||    
T  36307778 gtcagttctccaagccattccttcctac 36307751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 13813443 - 13813385
Alignment:
Q  22 ccacctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcagcaag 80  Q
    |||| |||||||| || || || || |||||||||||||||||||||||||||||||||    
T  13813443 ccacttttgcttatatcaaggaccgtgtgtggcaaagaataaattcttggagcagcaag 13813385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 21278072 - 21278019
Alignment:
Q  68 ttggagcagcaagtgtttgtccaaggcagggcgcgaagttatgatcaaatcggt 121  Q
    |||||||||||| |||||||||||||| || || || || ||||||||||||||    
T  21278072 ttggagcagcaaatgtttgtccaaggctggtcgtgaggtaatgatcaaatcggt 21278019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 136
Target Start/End: Complemental strand, 25750412 - 25750324
Alignment:
Q  48 gtgtggcaaagaataaattcttggagcagcaagtgtttgtccaaggcagggcgcgaagttatgatcaaatcggttcttcaagccattcc 136  Q
    |||||||||||||| | |  ||| |||||||| |||||||| || || ||| | || |||||||||||||| || |||||||| |||||    
T  25750412 gtgtggcaaagaattagtaattgaagcagcaaatgtttgtctaaagctgggagggaggttatgatcaaatctgtccttcaagctattcc 25750324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 316
Target Start/End: Original strand, 35364636 - 35364712
Alignment:
Q  237 ggtatcaattggctgagttgggaaaagttatcaatgcataaaaaatacggtggcatggggtttaaggacctctcaacttt 316  Q
    |||||||||||| ||  |||||| ||||| || | ||||||||| |||| ||||||||||||||| ||||||||| ||||    
T  35364636 ggtatcaattggatg--ttgggagaagttttcgaagcataaaaactacgatggcatggggtttaa-gacctctcagcttt 35364712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 320
Target Start/End: Original strand, 44493434 - 44493741
Alignment:
Q  16 gaacaaccacctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcagcaagtgtttgtccaaggcagggcgcgaagttatgatcaa 115  Q
    |||||||||| |||||||| |||| ||| ||||||||||||   || ||||| ||||| ||||||||  | || ||||||||||| ||||||||||||||    
T  44493434 gaacaaccacatttgcttatattatagaccgggtgtggcaacatattaattcgtggagtagcaagtgcctttctaaggcagggcgtgaagttatgatcaa 44493533  T
Q  116 atcggttcttcaagccattccctcctac---atgagtttgtttcatttaccgtcaacgctaatcactactattgagtgtatgataaacacgttctggtgg 212  Q
     || || || ||||| ||||| || ||    |||||||| ||||| | |||  ||||| |  | |   |||||||  | ||||| |||||||| ||||||    
T  44493534 gtctgtgctccaagctattccgtcttatgttatgagtttatttcaataaccaacaacgttggttatcgctattgaacggatgatgaacacgttttggtgg 44493633  T
Q  213 ggccatggtagaactaatcaccaaggtatcaattggctgagttgggaaaagttatcaatgcataaaaaatacggtggcatggggtttaaggacctctcaa 312  Q
    |||||||| ||||||  ||| |  || || |||||| ||||||||||||| ||||| |||||||||| | | ||||||||||| ||||| || ||||||     
T  44493634 ggccatggcagaacttctcatcggggcatgaattggatgagttgggaaaaattatcgatgcataaaacacatggtggcatgggttttaaagatctctcag 44493733  T
Q  313 ctttcaat 320  Q
    ||||||||    
T  44493734 ctttcaat 44493741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 135
Target Start/End: Complemental strand, 19822779 - 19822666
Alignment:
Q  22 ccacctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcagcaagtgtttgtccaaggcagggcgcgaagttatgatcaaatcggt 121  Q
    |||| ||||| ||||| |||||||| |||||||||| ||| ||||||||||||||||||||| | || ||||| ||||  || || |||||||| |||||    
T  19822779 ccacttttgcctacatcaaagatcgtgtgtggcaaaaaattaattcttggagcagcaagtgtctatctaaggcggggcatgaggtcatgatcaagtcggt 19822680  T
Q  122 tcttcaagccattc 135  Q
    ||||||||| ||||    
T  19822679 tcttcaagctattc 19822666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 54563389 - 54563265
Alignment:
Q  18 acaaccacctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcagcaagtgtttgtccaaggcagggcgcgaagttatgatcaaat 117  Q
    |||||||| || || || ||||| || || ||||||||| | || ||||||||||| || |||||  | || ||||||||||| |||||||||||||| |    
T  54563389 acaaccactttcgcctatattaaggaccgtgtgtggcaacgcattaattcttggagtagtaagtgcctctctaaggcagggcgtgaagttatgatcaagt 54563290  T
Q  118 cggttcttcaagccattccctccta 142  Q
    ||||||| ||||||||||| |||||    
T  54563289 cggttctccaagccattccttccta 54563265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 4485763 - 4485684
Alignment:
Q  21 accacctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcagcaagtgtttgtccaaggcagggcg 100  Q
    |||||||||||||| ||||| || || ||||||||||| |||||||||||||| ||||||||  | || |||||||||||    
T  4485763 accacctttgcttatattaaggaccgtgtgtggcaaaggataaattcttggagtagcaagtgcctctcaaaggcagggcg 4485684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 136
Target Start/End: Complemental strand, 14505688 - 14505598
Alignment:
Q  46 gggtgtggcaaagaataaattcttggagcagcaagtgtttgtccaaggcagggcgcgaagttatgatcaaatcggttcttcaagccattcc 136  Q
    |||| ||||||| ||||| |  ||||||||| || ||||||||||| |||||  | || |||||||||||||  ||||||||||| |||||    
T  14505688 gggtatggcaaaaaataagtatttggagcagtaaatgtttgtccaaagcaggtagagaggttatgatcaaatttgttcttcaagctattcc 14505598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 136
Target Start/End: Original strand, 34933498 - 34933586
Alignment:
Q  48 gtgtggcaaagaataaattcttggagcagcaagtgtttgtccaaggcagggcgcgaagttatgatcaaatcggttcttcaagccattcc 136  Q
    |||||||||||||| | |   |||||||| || |||||||| || || ||| | || |||||||||||||| ||||||||||| |||||    
T  34933498 gtgtggcaaagaatcagtagctggagcagtaaatgtttgtctaaagccgggagggaggttatgatcaaatctgttcttcaagctattcc 34933586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 263
Target Start/End: Complemental strand, 38490743 - 38490493
Alignment:
Q  16 gaacaaccacctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcagcaagtgtttgtccaaggcagggcgcgaagttatgatcaa 115  Q
    |||||||||| |||||||| ||||| ||||| ||||||||||  || ||||||||||| || |||||| | || || ||||| || ||||||||||| ||    
T  38490743 gaacaaccacttttgcttatattaaggatcgtgtgtggcaaatgattaattcttggagtagtaagtgtctctctaaagcaggtcgggaagttatgataaa 38490644  T
Q  116 atcggttcttcaagccattccctccta---catgagtttgtttcatttaccgtcaacgctaatcactactattgagtgtatgataaacacgttctggtgg 212  Q
     || ||||||||||||||||| || ||   ||||||| | || || |||||  | ||||| || ||||| || ||  | ||||| ||| |||| ||||||    
T  38490643 gtcagttcttcaagccattccttcttacgtcatgagtctcttccacttaccaactacgctgattactaccatcgaaagaatgatgaactcgttttggtgg 38490544  T
Q  213 ggccatggtagaactaatcaccaaggtatcaattggctgagttgggaaaag 263  Q
    || ||||||||||||   ||   |||||| |||||| ||||||||||||||    
T  38490543 ggtcatggtagaacttcgcatagaggtataaattggttgagttgggaaaag 38490493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 295
Target Start/End: Original strand, 9927476 - 9927564
Alignment:
Q  207 tggtggggccatggtagaactaatcaccaaggtatcaattggctgagttgggaaaagttatcaatgcataaaaaatacggtggcatggg 295  Q
    |||||||| ||| || | |||||| | |||||||| |||||| |   |||||||||||| || |||||||||||||| ||||| |||||    
T  9927476 tggtggggacattgtggtactaataatcaaggtattaattggatttcttgggaaaagttgtcgatgcataaaaaatatggtggtatggg 9927564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 130
Target Start/End: Complemental strand, 11605992 - 11605886
Alignment:
Q  24 acctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcagcaagtgtttgtccaaggcagggcgcgaagttatgatcaaatcggttc 123  Q
    |||||||||||||| || ||| | |||||||| | ||| ||||||||||| || |||||| | ||||| |||||||| ||||| ||||| |||||||| |    
T  11605992 acctttgcttacatcaaggatagagtgtggcataaaatcaattcttggagtagtaagtgtctttccaaagcagggcgtgaagtcatgattaaatcggtcc 11605893  T
Q  124 ttcaagc 130  Q
    |||||||    
T  11605892 ttcaagc 11605886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 315
Target Start/End: Complemental strand, 21976381 - 21976303
Alignment:
Q  237 ggtatcaattggctgagttgggaaaagttatcaatgcataaaaaatacggtggcatggggtttaaggacctctcaactt 315  Q
    |||||||||||| ||   ||||| ||| |||||||||||||||| || ||||||||||||||||| |||||||||||||    
T  21976381 ggtatcaattggatgtcatgggagaagctatcaatgcataaaaactatggtggcatggggtttaaagacctctcaactt 21976303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 18689563 - 18689648
Alignment:
Q  27 tttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcagcaagtgtttgtccaaggcagggcgcgaagttatgat 112  Q
    |||||| ||||||||||  |||||||||||| ||| ||||| || || ||||| |||||||| |||||||||||||| || |||||    
T  18689563 tttgctaacattaaagacagggtgtggcaaaaaattaattcgtgaagtagcaaatgtttgtcgaaggcagggcgcgaggtcatgat 18689648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 15925226 - 15925158
Alignment:
Q  68 ttggagcagcaagtgtttgtccaaggcagggcgcgaagttatgatcaaatcggttcttcaagccattcc 136  Q
    |||| ||| ||| ||||||||||| |||||  | ||||||||||||||||  ||||||||||| |||||    
T  15925226 ttggtgcaacaaatgtttgtccaaagcaggtagggaagttatgatcaaatttgttcttcaagctattcc 15925158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 11551699 - 11551763
Alignment:
Q  59 aataaattcttggagcagcaagtgtttgtccaaggcagggcgcgaagttatgatcaaatcggttc 123  Q
    ||||||||||||||| || || ||||| || ||||||||||||||||||||||||||||| ||||    
T  11551699 aataaattcttggagtagtaaatgtttatctaaggcagggcgcgaagttatgatcaaatccgttc 11551763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 124
Target Start/End: Original strand, 45013600 - 45013665
Alignment:
Q  59 aataaattcttggagcagcaagtgtttgtccaaggcagggcgcgaagttatgatcaaatcggttct 124  Q
    ||||||||||||||| || || ||||| || ||||||| |||||| ||| |||||||||| |||||    
T  45013600 aataaattcttggagtagtaattgtttatctaaggcagtgcgcgaggttgtgatcaaatccgttct 45013665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 48 - 136
Target Start/End: Complemental strand, 13248 - 13160
Alignment:
Q  48 gtgtggcaaagaataaattcttggagcagcaagtgtttgtccaaggcagggcgcgaagttatgatcaaatcggttcttcaagccattcc 136  Q
    |||||||||||||| | |  |||||||||||| |||||||| || || ||| | || |||||||||||||| ||||||||||| |||||    
T  13248 gtgtggcaaagaattagtagttggagcagcaaatgtttgtctaaagctgggagggaggttatgatcaaatctgttcttcaagctattcc 13160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 118
Target Start/End: Original strand, 19233903 - 19233994
Alignment:
Q  27 tttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcagcaagtgtttgtccaaggcagggcgcgaagttatgatcaaatc 118  Q
    |||||||| ||||||||||| || ||||| | |||||||| |||||| || |||||||| || || |||||||| || |||||||| |||||    
T  19233903 tttgcttatattaaagatcgagtttggcagaaaataaattattggagtagtaagtgtttatctaaagcagggcgtgaggttatgattaaatc 19233994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 22787920 - 22787800
Alignment:
Q  22 ccacctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcagcaagtgtttgtccaaggcagggcgcgaagttatgatcaaatcggt 121  Q
    |||| |||||||| ||||| || || ||||||||    || ||||||||||| || |||||  | || |||||||| || ||||||| |||||| |||||    
T  22787920 ccacatttgcttatattaaggaccgtgtgtggcatcacattaattcttggagtagtaagtgcctatctaaggcaggacgtgaagttacgatcaagtcggt 22787821  T
Q  122 tcttcaagccattccctccta 142  Q
    ||| ||||||||||| |||||    
T  22787820 tctccaagccattccttccta 22787800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 12353444 - 12353555
Alignment:
Q  1 tgattgggaggaaccgaacaaccacctttgcttacattaaagatcgggtgtggcaaagaataaattcttggagcagcaagtgtttgtccaaggcagggcg 100  Q
    ||||||| ||| |||||||  | || ||||| |||||||||||  |||||||||||| ||| ||||| ||||| || || |||||||| ||||||| |||    
T  12353444 tgattggtagggaccgaactgcaacgtttgcatacattaaagacagggtgtggcaaaaaatcaattcgtggagtagtaaatgtttgtcgaaggcagagcg 12353543  T
Q  101 cgaagttatgat 112  Q
    ||| || |||||    
T  12353544 cgaggtcatgat 12353555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University