View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18683_high_10 (Length: 478)
Name: NF18683_high_10
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18683_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 189 - 464
Target Start/End: Complemental strand, 29567622 - 29567345
Alignment:
| Q |
189 |
ttgcgttgagttgcttagattcgaattgaaacgaggtctatttataggtcttctccaaagatgccttgtaaagttttaaaatacttttttcttttgnnnn |
288 |
Q |
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| T |
29567622 |
ttgcgttgagttgcttagattcgaattgaaacgaggtctatttataggtcgtctccaaagatgccttgtaaagttttaaaatacttttttttttt--taa |
29567525 |
T |
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| Q |
289 |
nnnntaaattaagtaagcattttgacacaaattaattgtagnnnnnnnnnn----gactaaaaaattaatcaaagttggcttttgacttttgactgaaat |
384 |
Q |
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|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29567524 |
aaaataaattaagtaaacattttgacacaaattaattgtagtattttttttttttgactaaaaaattaatcaaagttggcttttgacttttgactgaaat |
29567425 |
T |
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| Q |
385 |
taatgttagtgacaatagaaaactttatattccctctattacagattagatgagtcatttgttcatttcaaatatattaa |
464 |
Q |
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| T |
29567424 |
taatgttagtgacaatagaaaactttatattccctctattacagattagatgagtcatttgttcatttcaaatatattaa |
29567345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 6 - 96
Target Start/End: Complemental strand, 29567805 - 29567715
Alignment:
| Q |
6 |
agaaaaagtaaaaactattgaagattttgttattcagcaaaaccacgaatagcaaggtttctgcaaataggatcaagattttatgaacacg |
96 |
Q |
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| T |
29567805 |
agaaaaagtaaaaactattgaagattttgttgtttagcaaaaccacgaatagcaaggtttctgcaaataggatcaagattttatgaacacg |
29567715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 437 - 467
Target Start/End: Complemental strand, 48391914 - 48391884
Alignment:
| Q |
437 |
agtcatttgttcatttcaaatatattaagaa |
467 |
Q |
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| T |
48391914 |
agtcatttgttcatttcaaatatattaagaa |
48391884 |
T |
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