View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18683_high_11 (Length: 467)
Name: NF18683_high_11
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18683_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 231
Target Start/End: Original strand, 4628918 - 4629136
Alignment:
| Q |
13 |
aatatcaatattttgtataattattgtgctttacagttgaagaaagctgagatgttgtgttttgttttggcttattctctttatgattaatggtcattga |
112 |
Q |
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| T |
4628918 |
aatatcaatattttgtacaattattgtgctttacagttgaagaaagctgagatgctgtgttttgttttggcctattctctttatgattgatggtcattca |
4629017 |
T |
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| Q |
113 |
tgattatgttgctatttgggaatgcctccggtggtggttttaaaaattataataggggaaaattttcaagtattagagtaaagaaaggctcaaatgagtg |
212 |
Q |
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| T |
4629018 |
tgattatgttgctatttgggaatgcctccggtggtggttttaaaaattataataggggaaaattttcaagtattagagtaaagaaaagctcaaatgtgtg |
4629117 |
T |
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| Q |
213 |
ttgttaagtcacagaaacc |
231 |
Q |
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| T |
4629118 |
ttgttaagttacagaaacc |
4629136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 13 - 191
Target Start/End: Original strand, 4664976 - 4665154
Alignment:
| Q |
13 |
aatatcaatattttgtataattattgtgctttacagttgaagaaagctgagatgttgtgttttgttttggcttattctctttatgattaatggtcattga |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4664976 |
aatatcaatattttgtataattattgtgctttacagttgaagaaagctgagatgttgtgttttgttttggcttattctctttatgattaatggtcattca |
4665075 |
T |
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| Q |
113 |
tgattatgttgctatttgggaatgcctccggtggtggttttaaaaattataataggggaaaattttcaagtattagagt |
191 |
Q |
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|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4665076 |
tgattatgttgctatttgggaacgcctccggcggtggttttaaaaattataataggggaaaaatttcaagtattagagt |
4665154 |
T |
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