View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18683_high_12 (Length: 462)
Name: NF18683_high_12
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18683_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 13 - 445
Target Start/End: Complemental strand, 12878559 - 12878125
Alignment:
| Q |
13 |
aaaatcatgttgcacgtaatacacttttttggaacaatactcttcatcataccttgaagaggtaaggtacgacatcaatagctgctcgagcaagggcaac |
112 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12878559 |
aaaagcatgttgcacgtaatacacttttttggaacaatactcttcatcataccttgaagaggtaaggtacgacatcaatagctgctcgagcaagggcaac |
12878460 |
T |
|
| Q |
113 |
tcgacctgcaaaggataaccgcttagccttccacgaggacattgtagcattaacttggtctatgagatactgacactctactt-ttttcagtgctctttc |
211 |
Q |
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| T |
12878459 |
tcgacctgcaaaggataactgcttagccttccacgaggacaatgtagcattaacttggtctatgagagactgacactctactttttttcagtgccctatc |
12878360 |
T |
|
| Q |
212 |
tatcaagggaataccgaagtacttccccagattagcaacttccataagtctgatgtaccaactaactgacttctaaccacactactggtatatttagag- |
310 |
Q |
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|| |||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12878359 |
taccaagggaataccaaaatacttccctagattagcaacttccataagtctgatgtaccaactaactgacttctaaccacactactggtatatttagaga |
12878260 |
T |
|
| Q |
311 |
nnnnnnnnngttgcactaaccttttactgttacaaaaactcaacagaatctccatttcacttaacattcgtctcaaaagtagcaatagagaccaagatga |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
12878259 |
aaaaaaaaagttgcactaaccttttactgttacaaaaactcaacagaatctccatttcacttaacattcgtctcaacagtagtaatagagaccaagatga |
12878160 |
T |
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| Q |
411 |
actatataatataagaagcaaactagttaccatat |
445 |
Q |
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||||||||||||| ||||||||||||||||||||| |
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| T |
12878159 |
actatataatatatgaagcaaactagttaccatat |
12878125 |
T |
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