View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18683_high_13 (Length: 432)
Name: NF18683_high_13
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18683_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 17 - 418
Target Start/End: Original strand, 3081220 - 3081632
Alignment:
| Q |
17 |
cattaagagccatagaaatagcaaaagaaagacattgaaacaacttatggattgaaatagattcccaattattggtgtcaactttcaagaaagattatat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3081220 |
cattaagagccatagaaatagcaaaagaaagacattgaaacaacttatggattgaaatagattcccaattattggtgtcaactttcaagaaagattatat |
3081319 |
T |
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| Q |
117 |
gagtccttgtagtctgagaaacatatggagtaatgctctaattgttactaagaacatgaacttcatggttacacatatttataggaaagataaccaatgt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3081320 |
gagtccttgtagtctgagaaacatatggagtaatgctctaattgttactaagaacatgaacttcatggttacacatatttataggaaagataaccaatgt |
3081419 |
T |
|
| Q |
217 |
gcaaatgatttaac-----------taactttgtctgactttaggtttttcgataacattcctaatcctttatttttcgcggctacaatttggtgggcat |
305 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3081420 |
gcaaatgatttaactaactttggtttaactttgtctgactttaggtttttcgataacattcctaatcctttatttttcgcggctacaatttggtgggcat |
3081519 |
T |
|
| Q |
306 |
gtcgccaccgaaacaagatgtgcttcaataatgaaatttggtcgataaatcatctatcattaaacattnnnnnnntggttgaaactttcaaagcttgctt |
405 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3081520 |
gtcgccaccgaaacaagatgtgcttcaataataaaatttggtcgataaatcatctatcattaaacattaagaaaatggttgaaactttcaaagcttgctt |
3081619 |
T |
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| Q |
406 |
ccccccactctcc |
418 |
Q |
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||||||||||||| |
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| T |
3081620 |
ccccccactctcc |
3081632 |
T |
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