View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18683_high_14 (Length: 431)
Name: NF18683_high_14
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18683_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 4 - 417
Target Start/End: Complemental strand, 1687605 - 1687192
Alignment:
| Q |
4 |
gatgaaaatataccttgaacgttatgcactcgagttaaaaatgattcaacagcttcatgataggcttttcttatctcctcccaatacctcctcttatgtt |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1687605 |
gatgaaaatataccttgaacgttatgcactcgagttaaaaatgattcaacagcttcatgataggcttttcttatctcctcccaatacctcctcttatgtt |
1687506 |
T |
|
| Q |
104 |
catctttctcatcatgtttgttttcagcaacgagcaagttccatacacgtaatgtctcttcgtcaaactttacgtcgactttcaacaatggccgttcata |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
1687505 |
catctttctcatcatgtttgttttcagcaacgagcaagttccatacacgtaatgtctcttcgtcaaactttacattgactttcaacaatggccgttcata |
1687406 |
T |
|
| Q |
204 |
aagaactaattctcctgattttttacggacatttctcttattttcctttcgatgtannnnnnnattcgaggaaataatcttcttgattatagttttcatt |
303 |
Q |
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| T |
1687405 |
aagaactaattctcctgattttttacggacatttctcttatttgcctttcgatgtatttttttatttgaggaaataatcttcttgattatagttttcatt |
1687306 |
T |
|
| Q |
304 |
tttcggctgattgtagtagaatttccttctacgtagaaatctttccaacatttcctcttcctaataaaagtttttgatctactaccctttgcaaaagggt |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1687305 |
tttcggctgattgtagtagaatttccttctacgtagaaatctttccaacatttcctcttcctaataaaagtttttgatctactaccctttgcaaaagggt |
1687206 |
T |
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| Q |
404 |
tcaagagttttacc |
417 |
Q |
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| T |
1687205 |
tcaagagttttacc |
1687192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 2 - 417
Target Start/End: Complemental strand, 41918728 - 41918316
Alignment:
| Q |
2 |
gagatgaaaatataccttgaacgttatgcactcgagttaaaaatgattcaacagcttcatgataggcttttcttatctcctcccaatacctcctcttatg |
101 |
Q |
| |
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|||||||||||||||||||||| |||||||| || ||| |||||| ||| || ||| ||| |||||||||| ||||||||||||||||||||| |
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| T |
41918728 |
gagatgaaaatataccttgaacagtatgcacttgatctaagaatgatataaccattttatggtagagttttcttatcatctcccaatacctcctcttatg |
41918629 |
T |
|
| Q |
102 |
ttcatctttctcatcatgtttgttttcagcaacgagcaagttccatacacgtaatgtctcttcgtcaaactttacgtcgactttcaacaatggccgttca |
201 |
Q |
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|||||| ||||| ||||||||||||||| ||||||| || |||||||| ||||||||||||||||||| | |||| || |||| |||| || | | |
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| T |
41918628 |
ttcatcattctcttcatgtttgttttcaacaacgagtaaattccatactcgtaatgtctcttcgtcaagcattacttcaacttctgctgatggtcgatta |
41918529 |
T |
|
| Q |
202 |
taaagaactaattctcctgattttttacggacatttctcttattttcctttcgatgtannnnnnnattcgaggaaataatcttcttgattatagttttca |
301 |
Q |
| |
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|||||||||||||| ||||| ||||| ||||||| ||||||||||| ||||||||| | ||| |||||||||| |||||||||| || | ||| |
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| T |
41918528 |
taaagaactaattcccctgactttttgcggacatctctcttatttttctttcgatgcatttttttcttcaaggaaataattttcttgattaaagatctca |
41918429 |
T |
|
| Q |
302 |
tttttcggctgattgtagtagaatttccttctacgtagaaatctttccaacatttcctcttcctaataaaagtttttgatctactaccctttgcaaaagg |
401 |
Q |
| |
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||||||||||| || ||||||||||||||| | | || | | |||||||||| |||||| ||| |||| |||||||||| ||||||||||| || |
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| T |
41918428 |
tttttcggctg---gttgtagaatttccttctgcccaaaattgtgtccaacattttctcttcgtaacaaaactttttgatctctggccctttgcaaacgg |
41918332 |
T |
|
| Q |
402 |
gttcaagagttttacc |
417 |
Q |
| |
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| ||||||||||||| |
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| T |
41918331 |
gggcaagagttttacc |
41918316 |
T |
|
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