View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18683_high_16 (Length: 424)
Name: NF18683_high_16
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18683_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-156; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 16 - 339
Target Start/End: Complemental strand, 23737289 - 23736967
Alignment:
| Q |
16 |
atcattctcgatcccaggtgcctcatagatgttctctacagtttcatcatttgtaatgcgcgcaatcgtggcaattttagcaaccgcaataataacaacc |
115 |
Q |
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| T |
23737289 |
atcattctcaatcccaggtgcctcatagatgttctctacagtttcatcatttgtaatgcgcgcaatcgtggcaattttagcaaccgcaataataacaacc |
23737190 |
T |
|
| Q |
116 |
tcaggttgtgtatcgtgtgtcattggtgaattatgctcaactagtactaattgggataaatatttaacttttcagatcaatcacaatactgattgtgata |
215 |
Q |
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|||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
23737189 |
tcaggttgtgcatcgtgtgtcattggtgaattatgttctactagtactaattgggataaatatttaacttttccgatcaattacaatactgattgtgata |
23737090 |
T |
|
| Q |
216 |
accatgaatacagctagaatcaggggatgatacgataatcgatgcaattaattaatatttaagaaattgatgatatgacaatagatgaaggttggatttt |
315 |
Q |
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|||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23737089 |
accatgcatacag-tagaataaggggatgatacgataatcgatgcaattaattaatatttaagaaattgatgatatgacaatagatgaaggttggatttt |
23736991 |
T |
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| Q |
316 |
ttattgtatggttgaaatttatgt |
339 |
Q |
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||| |||||||||||||||||||| |
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| T |
23736990 |
ttactgtatggttgaaatttatgt |
23736967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 31150079 - 31149974
Alignment:
| Q |
18 |
cattctcgatcccaggtgcctcatagatgttctctacagtttcatcatttgtaatgcgcgcaatcgtggcaattttagcaaccgcaataataacaacctc |
117 |
Q |
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||||||| ||| ||||||||| |||| || ||||||||||| |||||||||||||| | |||| |||||||||| | ||| ||| ||||| ||||||| |
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| T |
31150079 |
cattctcaatctcaggtgccttatagctgatctctacagttgcatcatttgtaatgtgtgcaactgtggcaatttcaataactgcagtaatagcaacctc |
31149980 |
T |
|
| Q |
118 |
aggttg |
123 |
Q |
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|||||| |
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|
| T |
31149979 |
aggttg |
31149974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 31138231 - 31138329
Alignment:
| Q |
18 |
cattctcgatcccaggtgcctcatagatgttctctacagtttcatcatttgtaatgcgcgcaatcgtggcaattttagcaaccgcaataataacaacct |
116 |
Q |
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||||||| ||| || ||||||| ||| | |||||| ||||||||||||||||||| ||||||| ||| |||||| | ||||||| ||||| |||||| |
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| T |
31138231 |
cattctcaatctcatgtgcctcgtagtttatctctatagtttcatcatttgtaatgtgcgcaattgtgacaatttcaataaccgcagtaatagcaacct |
31138329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 407
Target Start/End: Complemental strand, 3904250 - 3904210
Alignment:
| Q |
367 |
agacctgacatatattatgtattgtccctatcaattaagtt |
407 |
Q |
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| T |
3904250 |
agaccttacatatattatgcattgtccctatcaactaagtt |
3904210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 391
Target Start/End: Complemental strand, 16004818 - 16004778
Alignment:
| Q |
351 |
tcgtagtttgaattcaagacctgacatatattatgtattgt |
391 |
Q |
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||||||||||||||| | |||| |||||||||||||||||| |
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| T |
16004818 |
tcgtagtttgaattccaaaccttacatatattatgtattgt |
16004778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 407
Target Start/End: Complemental strand, 1184958 - 1184918
Alignment:
| Q |
367 |
agacctgacatatattatgtattgtccctatcaattaagtt |
407 |
Q |
| |
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|||||| |||||||||||| ||||||||||| ||||||||| |
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| T |
1184958 |
agaccttacatatattatgaattgtccctattaattaagtt |
1184918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 23238250 - 23238326
Alignment:
| Q |
16 |
atcattctcgatcccaggtgcctcatagatgttctctacagtttcatcatttgtaatgcgcgcaatcgtggcaattt |
92 |
Q |
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||||||||| ||| |||||| |||||| || ||||||||||||| ||||| |||||| | |||| |||||||||| |
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| T |
23238250 |
atcattctcaatcttaggtgcttcatagctgatctctacagtttcgtcattaataatgcacacaattgtggcaattt |
23238326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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