View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18683_high_17 (Length: 414)
Name: NF18683_high_17
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18683_high_17 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 9 - 414
Target Start/End: Complemental strand, 33457874 - 33457469
Alignment:
| Q |
9 |
gagatgaataaaccagagagctccacattaaatttgacgtcacaatgatgaaggcgcggcaaggtagaatgctgcgacaagaatcagagaccacaatagt |
108 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
33457874 |
gagatgaataaaccagagagctccacagtaaatttgacgtcacaatgatgaaggcgcgacaaggtagaatgctgcgacaagaatcagagaccacaacagt |
33457775 |
T |
|
| Q |
109 |
gcagaagatgcacaaaaacagatgtctctctaatattttcatcatgcgttgatctcatctgttcatccaacaaccaatgtcattgatcatacataaattt |
208 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33457774 |
gcagaagatgcacaaaaacagttgtctctctaatattttcatcatgcgttgatctcatctgttcatccaacaaccaatgtcattgatcatacataaattt |
33457675 |
T |
|
| Q |
209 |
tcccataaattataaatttcaagagtatagagtaaaccagcactgctgctcccactgcaatgttttcccataaatgcaatgcttgctatcatgtaaaccg |
308 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33457674 |
tcccataaattatgaatttcaagagtatagagtaaaccagcactgctgctcccactgcaatgctttcccataaatgcaatgcttgctatcatgtaaaccg |
33457575 |
T |
|
| Q |
309 |
aaaatacctgcagagccatacataaattttgaacaaatagcttcagaactccttagatggctatgaattaatgctatataaattgtgtacagtagaatta |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33457574 |
aaaatacctgcagagccatacataaattttgaacaaatagcttcagaactctttagatggctatgaattaatgctatataaattgtgtacagtagaatta |
33457475 |
T |
|
| Q |
409 |
atatac |
414 |
Q |
| |
|
|||||| |
|
|
| T |
33457474 |
atatac |
33457469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University