View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18683_high_18 (Length: 399)
Name: NF18683_high_18
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18683_high_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 14)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 35 - 383
Target Start/End: Original strand, 3801211 - 3801559
Alignment:
| Q |
35 |
ttccacgaagcatatgagcaaaaactttaagaactaatggaactcctttggcatattcgatcaccctctttgatagctcatagtacttcatttcaagatg |
134 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
3801211 |
ttccacgaagcatatgagccaaaactttaagaactaatggaactcctttggcatattcgatcaccctctttgatagctcatagtactccatttcaggatg |
3801310 |
T |
|
| Q |
135 |
actttgtttaaaggcattcaaattgaaaagcgcaagtgcttcgctagaattcaataccccaacttcatatacatcatcatcatcaacttcattagcaata |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||| ||||||| |||||| |||| |||||||||| |||| |
|
|
| T |
3801311 |
actttgtttaaaggcattcaaattgaaaagctcaagtgcttcactagaatccaataccccaacctcatatagatcatcgtcatacacttcattaggaata |
3801410 |
T |
|
| Q |
235 |
agtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataacatccttagcagatctttttcctcaatat |
334 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| ||||| |
|
|
| T |
3801411 |
agtacttgcttatctctacttgttacaattattctactatcagattgaaaccaatcaagagttccaaataacatctctagcagaccttcttccttaatat |
3801510 |
T |
|
| Q |
335 |
catcaagaacaataagaaccttcatacggccaatccttctatgaatatt |
383 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3801511 |
catcaagatcaataagaaccttcatacggccaatccttctatgaatatt |
3801559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 28 - 383
Target Start/End: Original strand, 4218261 - 4218616
Alignment:
| Q |
28 |
ttatgtcttccacgaagcatatgagcaaaaactttaagaactaatggaactcctttggcatattcgatcaccctctttgatagctcatagtacttcattt |
127 |
Q |
| |
|
|||||| ||||||||| ||||||| | |||||||||||||||||||||| |||||||||||| |||| |||| |||||||||| || |||||||| |||| |
|
|
| T |
4218261 |
ttatgttttccacgaaacatatgacccaaaactttaagaactaatggaattcctttggcataatcgaccaccttctttgatagatcgtagtacttaattt |
4218360 |
T |
|
| Q |
128 |
caagatgactttgtttaaaggcattcaaattgaaaagcgcaagtgcttcgctagaattcaataccccaacttcatatacatcatcatcatcaacttcatt |
227 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4218361 |
caagatgactttctttaaaggcattcaaattgaaaagcgcaagtgcatcgctagaattcaataccccaacttcatatacatcatcatcatcaacttcatt |
4218460 |
T |
|
| Q |
228 |
agcaataagtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataacatccttagcagatctttttcc |
327 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||| ||||||||||| ||| ||||||||||||||||||||||||||||| ||||||| ||| |||| |
|
|
| T |
4218461 |
agcaataagtacttgcttatctctagatgttacaatgattctactatcggatcgaaaccaatcaagagttccaaataacatctctagcagaccttcttcc |
4218560 |
T |
|
| Q |
328 |
tcaatatcatcaagaacaataagaaccttcatacggccaatccttctatgaatatt |
383 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4218561 |
ttaatatcatcaagaacaataagaaccttcatacggtcaatccttctatgaatatt |
4218616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 374
Target Start/End: Original strand, 4009606 - 4009960
Alignment:
| Q |
20 |
attcttccttatgtcttccacgaagcatatgagcaaaaactttaagaactaatggaactcctttggcatattcgatcaccctctttgatagctcatagta |
119 |
Q |
| |
|
|||||||||| | | |||||||||| | |||||| ||||||| |||||||||||||| |||||||||||| |||| ||| |||||||||| |||||||| |
|
|
| T |
4009606 |
attcttccttgtcttttccacgaagtagatgagccaaaacttcaagaactaatggaattcctttggcataatcgaccactttctttgatagatcatagta |
4009705 |
T |
|
| Q |
120 |
cttcatttcaagatgactttgtttaaaggcattcaaattgaaaagcgcaagtgcttcgctagaattcaataccccaacttcatatacatcatcatcatca |
219 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||| | ||||| ||||||||| ||| |
|
|
| T |
4009706 |
ctccatttcaagatgactttgtttaaaggcattcaaattgaaaagctcaagtgcttcactagaatccaataccccaacctgatatagatcatcatcttca |
4009805 |
T |
|
| Q |
220 |
acttcattagcaataagtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataacatccttagcagat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||| |||||||||||||||||| |||||||||| |||| || |
|
|
| T |
4009806 |
acttcattagcaataagtacttgcttatctctagttgttaaaattattctactatcggatcgaaaccaatcaagagttctaaataacatctctagctgac |
4009905 |
T |
|
| Q |
320 |
ctttttcctcaatatcatcaagaacaataagaaccttcatacggccaatccttct |
374 |
Q |
| |
|
||| ||||| || |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4009906 |
cttcttccttaacatcatcaagaacaataagaaccttcatacgaccaatccttct |
4009960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 35 - 370
Target Start/End: Complemental strand, 3920243 - 3919908
Alignment:
| Q |
35 |
ttccacgaagcatatgagcaaaaactttaagaactaatggaactcctttggcatattcgatcaccctctttgatagctcatagtacttcatttcaagatg |
134 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
3920243 |
ttccacgaagcatatgagccaaaactttaagaactaatggaactcctttggcatattcgatcaccctctttgatagctcatagtactccatttcaggatg |
3920144 |
T |
|
| Q |
135 |
actttgtttaaaggcattcaaattgaaaagcgcaagtgcttcgctagaattcaataccccaacttcatatacatcatcatcatcaacttcattagcaata |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||| ||| ||||||| | |||||| |||||||||||||| | |
|
|
| T |
3920143 |
actttgtttaaaggcattcaaattgaaaagctcaagtgcttcactagaatccaataccctaacctcatatagaccatcatgatcaacttcattagtcctt |
3920044 |
T |
|
| Q |
235 |
agtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataacatccttagcagatctttttcctcaatat |
334 |
Q |
| |
|
||||||||||||||||| | | ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| | |||| | || |
|
|
| T |
3920043 |
agtacttgcttatctctggatgttagaattattctactatcagattgaaaccaatcaagagttccaaataacatctcgagctgatctgtctccttgacat |
3919944 |
T |
|
| Q |
335 |
catcaagaacaataagaaccttcatacggccaatcc |
370 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||||| |
|
|
| T |
3919943 |
catcaagaacgataagaaccttcatgcggctaatcc |
3919908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 35 - 370
Target Start/End: Complemental strand, 3933467 - 3933132
Alignment:
| Q |
35 |
ttccacgaagcatatgagcaaaaactttaagaactaatggaactcctttggcatattcgatcaccctctttgatagctcatagtacttcatttcaagatg |
134 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
3933467 |
ttccacgaagcatatgagccaaaactttaagaactaatggaactcctttggcatattcgatcaccctctctgatagctcatagtactccatttcaagatg |
3933368 |
T |
|
| Q |
135 |
actttgtttaaaggcattcaaattgaaaagcgcaagtgcttcgctagaattcaataccccaacttcatatacatcatcatcatcaacttcattagcaata |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||| ||| ||| ||| |||||||| |||||||||||| | || | |
|
|
| T |
3933367 |
actttgtttaaaggcattcaaattgaaaagctcaagtgcttcactagaatccaataccctaacctcacatagatcatcattatcaacttcattggtaaca |
3933268 |
T |
|
| Q |
235 |
agtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataacatccttagcagatctttttcctcaatat |
334 |
Q |
| |
|
|| |||||||||| |||| | ||||||||||||||||||| || ||||||||||||||| ||||||||||||| |||||||||| |||| | | || |
|
|
| T |
3933267 |
agcacttgcttatttctactggttacaattattctactatctaatcgaaaccaatcaagagatccaaataacatctctagcagatctgtttcattgacat |
3933168 |
T |
|
| Q |
335 |
catcaagaacaataagaaccttcatacggccaatcc |
370 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| |||| |
|
|
| T |
3933167 |
catcaagaacaataagaactttcatgcggccgatcc |
3933132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 35 - 370
Target Start/End: Original strand, 3817221 - 3817556
Alignment:
| Q |
35 |
ttccacgaagcatatgagcaaaaactttaagaactaatggaactcctttggcatattcgatcaccctctttgatagctcatagtacttcatttcaagatg |
134 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||| |||| ||||||||||| | || ||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
3817221 |
ttccacgaagcatatgagctaaaaccttaagaactaacggaatccctttggcataattgaccacactctttgatagctcatagtactccatttcaagatg |
3817320 |
T |
|
| Q |
135 |
actttgtttaaaggcattcaaattgaaaagcgcaagtgcttcgctagaattcaataccccaacttcatatacatcatcatcatcaacttcattagcaata |
234 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||| ||||||| |||||||||||| ||||||| ||||||||| |||||||||||| | |
|
|
| T |
3817321 |
actttgtttaaaggcattcgaattgaaaagcacaagtgcttcactagaatccaataccccaacctcatatatatcatcatcttcaacttcattattcctt |
3817420 |
T |
|
| Q |
235 |
agtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataacatccttagcagatctttttcctcaatat |
334 |
Q |
| |
|
||||||||||||||||| | | ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| | |||| | || |
|
|
| T |
3817421 |
agtacttgcttatctctggatgttagaattattctactatcagattgaaaccaatcaagagttccaaataacatctcgagctgatctgtctccttgacat |
3817520 |
T |
|
| Q |
335 |
catcaagaacaataagaaccttcatacggccaatcc |
370 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||||| |
|
|
| T |
3817521 |
catcaagaacgataagaaccttcatgcggctaatcc |
3817556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 20 - 305
Target Start/End: Complemental strand, 3956002 - 3955723
Alignment:
| Q |
20 |
attcttccttatgtcttccacgaagcatatgagcaaaaactttaagaactaatggaactcctttggcatattcgatcaccctctttgatagctcatagta |
119 |
Q |
| |
|
|||||||||| | | |||||||||||| |||||| |||||||||||||||||||||| |||||||||||| ||||||||| ||||||| ||||||||||| |
|
|
| T |
3956002 |
attcttccttgtcttttccacgaagcagatgagccaaaactttaagaactaatggaattcctttggcataatcgatcaccttctttgaaagctcatagta |
3955903 |
T |
|
| Q |
120 |
cttcatttcaagatgactttgtttaaaggcattcaaattgaaaagcgcaagtgcttcgctagaattcaataccccaacttcatatacatcatcatcatca |
219 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||| ||||||| |
|
|
| T |
3955902 |
ctccatttcaagatgactttgattaaaggcattcaaattgaaaagctcaagtgcttcgctataattcagtaccccaacttcatata------tatcatca |
3955809 |
T |
|
| Q |
220 |
acttcattagcaataagtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataa |
305 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3955808 |
acttcattagtaataagtacttgcttgtctctaattgttacaattattctactatcagatcgaaaccaatcaagagttccaaataa |
3955723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 35 - 374
Target Start/End: Original strand, 4024857 - 4025190
Alignment:
| Q |
35 |
ttccacgaagcatatgagcaaaaactttaagaactaatggaactcctttggcatattcgatcaccctctttgatagctcatagtacttcatttcaagatg |
134 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||| ||||| | |||||||||| |
|
|
| T |
4024857 |
ttccacgaagcatatgagccaaaactttaagaactaatggaattcctttggcataatcgatcaccttctttgatagctcaaagtacaccgtttcaagatg |
4024956 |
T |
|
| Q |
135 |
actttgtttaaaggcattcaaattgaaaagcgcaagtgcttcgctagaattcaataccccaacttcatatacatcatcatcatcaacttcattagcaata |
234 |
Q |
| |
|
|| ||||||||| |||||||| ||||||||| |||||||||| ||||||| |||||||||||| ||||||| ||| ||||||||||||| |||| |
|
|
| T |
4024957 |
acgttgtttaaatgcattcaagttgaaaagctcaagtgcttcactagaatccaataccccaacctcatata------catgatcaacttcattacaaata |
4025050 |
T |
|
| Q |
235 |
agtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataacatccttagcagatctttttcctcaatat |
334 |
Q |
| |
|
||||||||| | ||||||||| | |||||||| |||||||||||| ||| ||||||||| ||||||||||||||| || | || ||| ||||| || | |
|
|
| T |
4025051 |
agtacttgcatgtctctagttgtgacaattatcctactatcagatagaagccaatcaagtgttccaaataacatctctatctgaccttcttccttaacgt |
4025150 |
T |
|
| Q |
335 |
catcaagaacaataagaaccttcatacggccaatccttct |
374 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4025151 |
catcaagaacaataaggaccttcatacggccaatccttct |
4025190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 35 - 382
Target Start/End: Original strand, 4001929 - 4002271
Alignment:
| Q |
35 |
ttccacgaagcatatgagcaaaaactttaagaactaatggaactcctttggcatattcgatcaccctctttgatagctcatagtacttcatttcaagatg |
134 |
Q |
| |
|
|||||||||| | |||||| |||||||||| | ||||||||| |||||| ||||| | | |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4001929 |
ttccacgaagtaaatgagccaaaactttaacacctaatggaattccttttgcatacgcaaccaccctctttgatagctcatagtactccatttcaagatg |
4002028 |
T |
|
| Q |
135 |
actttgtttaaaggcattcaaattgaaaagcgcaagtgcttcgctagaattcaataccccaacttcatatacatcatcatcatcaacttcattagcaata |
234 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||| || |||| ||||| |||||||||||||||| |||| |||||||||||||| |||| |
|
|
| T |
4002029 |
actttgtttaaaggcattcaaatgaaaaagctcaagtgcctcactaggtttcaacaccccaacttcatatatatca-----atcaacttcattagtaata |
4002123 |
T |
|
| Q |
235 |
agtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataacatccttagcagatctttttcctcaatat |
334 |
Q |
| |
|
||||||||||| |||||||| |||||||||| |||||||| ||| ||||||||||||||||||||||||||||| || || ||| ||||| || || |
|
|
| T |
4002124 |
agtacttgcttgtctctagtcgttacaattatcctactatcggatcgaaaccaatcaagagttccaaataacatctctatttgaccttcttccttaacat |
4002223 |
T |
|
| Q |
335 |
catcaagaacaataagaaccttcatacggccaatccttctatgaatat |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | || ||||||| |
|
|
| T |
4002224 |
catcaagaacaataagaaccttcatacggccaatcatcctctgaatat |
4002271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 35 - 368
Target Start/End: Original strand, 3986620 - 3986953
Alignment:
| Q |
35 |
ttccacgaagcatatgagcaaaaactttaagaactaatggaactcctttggcatattcgatcaccctctttgatagctcatagtacttcatttcaagatg |
134 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||||||||| | || |||||||||||||| |||| ||| |||||||||| |
|
|
| T |
3986620 |
ttccacgaagcatatgagccaaaactttaagaactaatggatttcctttggcataattgaccaccctctttgatatttcatcaaactcagtttcaagatg |
3986719 |
T |
|
| Q |
135 |
actttgtttaaaggcattcaaattgaaaagcgcaagtgcttcgctagaattcaataccccaacttcatatacatcatcatcatcaacttcattagcaata |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| || ||||||| |||||||||||| |||||| ||||||||| |||||||||||| ||| | |
|
|
| T |
3986720 |
actttgtttaaaggcattcaaattgaaaagtgcaagtgcatcactagaatccaataccccaacctcatatcgatcatcatcgtcaacttcattatcaaaa |
3986819 |
T |
|
| Q |
235 |
agtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataacatccttagcagatctttttcctcaatat |
334 |
Q |
| |
|
||||||||||||||||| | | ||| ||||||||||||||| ||||||||||| ||||||||| | ||||||||| |||| |||||| |||| || || |
|
|
| T |
3986820 |
agtacttgcttatctctggctgttagaattattctactatctgattgaaaccagtcaagagtttcgaataacatctctagctgatcttcgtccttaacat |
3986919 |
T |
|
| Q |
335 |
catcaagaacaataagaaccttcatacggccaat |
368 |
Q |
| |
|
||||||||| |||||||||||||| || ||||| |
|
|
| T |
3986920 |
catcaagaatgataagaaccttcatgcgtccaat |
3986953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 35 - 370
Target Start/End: Original strand, 3809638 - 3809976
Alignment:
| Q |
35 |
ttccacgaagcatatgagcaaaaactttaagaactaatggaactcctttggcatattcgatcaccctctttgatagctcatagtact--tcat-ttcaag |
131 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||| | ||| ||| |||||| |
|
|
| T |
3809638 |
ttccacgaagcatattagccaaaactttaagaactaatggaattcctttggcatattcggtcaccctctttgatacatcacaaaactgatcaacttcaag |
3809737 |
T |
|
| Q |
132 |
atgactttgtttaaaggcattcaaattgaaaagcgcaagtgcttcgctagaattcaataccccaacttcatatacatcatcatcatcaacttcattagca |
231 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| ||||| |||| ||| | |||||||||||| ||| | | |||||| | |||||||||||||||| |
|
|
| T |
3809738 |
atcactttgtttaaaggcattcaaattgaaaagctcaagttcttcagtaggacccaataccccaacctcaaacagatcatctttatcaacttcattagca |
3809837 |
T |
|
| Q |
232 |
ataagtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataacatccttagcagatctttttcctcaa |
331 |
Q |
| |
|
|||||||||||||||||||| | | ||| |||||||||||||||| |||||||||||||| | |||||||||| | ||| ||||| | ||| | |
|
|
| T |
3809838 |
ataagtacttgcttatctctggctgttaaaattattctactatcatattgaaaccaatcacaacttccaaataatttttccagctgatctgtacccttga |
3809937 |
T |
|
| Q |
332 |
tatcatcaagaacaataagaaccttcatacggccaatcc |
370 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
3809938 |
cgtcatcaagaacgataagaaccttcatgcggccaatcc |
3809976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 35 - 172
Target Start/End: Original strand, 4018342 - 4018479
Alignment:
| Q |
35 |
ttccacgaagcatatgagcaaaaactttaagaactaatggaactcctttggcatattcgatcaccctctttgatagctcatagtacttcatttcaagatg |
134 |
Q |
| |
|
|||| ||||| | |||||| |||||||||||||||||||||| ||||||||||| | || ||||||||||| |||||||||||||| |||||||| | |
|
|
| T |
4018342 |
ttccgcgaagaagatgagccaaaactttaagaactaatggaatgcctttggcataattgaccaccctctttgttagctcatagtactcaatttcaagttc |
4018441 |
T |
|
| Q |
135 |
actttgtttaaaggcattcaaattgaaaagcgcaagtg |
172 |
Q |
| |
|
| ||| || |||||||||||||||||| |||||| |
|
|
| T |
4018442 |
cttaactttgaaagcattcaaattgaaaagctcaagtg |
4018479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 333 - 383
Target Start/End: Complemental strand, 3954608 - 3954558
Alignment:
| Q |
333 |
atcatcaagaacaataagaaccttcatacggccaatccttctatgaatatt |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3954608 |
atcatcaagaacaataagaaccttcatacggccaatccttctctgaatatt |
3954558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 55 - 172
Target Start/End: Complemental strand, 3963746 - 3963629
Alignment:
| Q |
55 |
aaaactttaagaactaatggaactcctttggcatattcgatcaccctctttgatagctcatagtacttcatttcaagatgactttgtttaaaggcattca |
154 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| | | |||||||||||||||||||| ||||| |||||||| | | ||| || ||||||| |
|
|
| T |
3963746 |
aaaactttaagaactaatggaatgcctttggcataattcaccaccctctttgatagctcattgtactcaatttcaagttccttacctttgaaagcattca |
3963647 |
T |
|
| Q |
155 |
aattgaaaagcgcaagtg |
172 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
3963646 |
aattgaaaagctcaagtg |
3963629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 35 - 382
Target Start/End: Original strand, 13397572 - 13397922
Alignment:
| Q |
35 |
ttccacgaagcatatgagcaaaaactttaagaactaatggaactcctttggcatattcgatcaccctctttgatagctcatagtacttcatttcaagatg |
134 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| | |||||||||||| |||| |||||||||||||| ||||| ||| |||||||||| |
|
|
| T |
13397572 |
ttccacgaagcatatgagccaaaactttaagaactaatgggattcctttggcataatcgaccaccctctttgatacatcataaaactcgttttcaagatg |
13397671 |
T |
|
| Q |
135 |
actttgtttaaaggcattcaaattgaaaagcgcaagtgcttcgctagaattcaataccccaacttcatata---catcatcatcatcaacttcattagca |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||| ||||||| ||||||||||| |||||||||||||| |
|
|
| T |
13397672 |
actttgtttaaaggcattcaaattgaaaagcgcaagtgcttcactagaatccaataccctaacctcatataaagcatcatcatcaacaacttcattagca |
13397771 |
T |
|
| Q |
232 |
ataagtacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaaataacatccttagcagatctttttcctcaa |
331 |
Q |
| |
|
||||||||||||||||| || ||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||| || ||| |||| || |
|
|
| T |
13397772 |
ataagtacttgcttatccctggttgttataattattctactatcagatcgaaaccaatcaagagttccaaataacatctccagctgaccttcttccgtaa |
13397871 |
T |
|
| Q |
332 |
tatcatcaagaacaataagaaccttcatacggccaatccttctatgaatat |
382 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
13397872 |
catcatcaagaacaataagaaccttcatatggccaatccttctctgaatat |
13397922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 59 - 134
Target Start/End: Complemental strand, 7031099 - 7031024
Alignment:
| Q |
59 |
ctttaagaactaatggaactcctttggcatattcgatcaccctctttgatagctcatagtacttcatttcaagatg |
134 |
Q |
| |
|
|||||||||||| |||||| ||| || ||| |||| || | ||||||||||||||||||||| |||||| ||||| |
|
|
| T |
7031099 |
ctttaagaactagtggaacacctgcggtataatcgaccatcttctttgatagctcatagtactccatttcgagatg |
7031024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 7075196 - 7075263
Alignment:
| Q |
101 |
tctttgatagctcatagtacttcatttcaagatgactttgt---ttaaaggcattcaaattgaaaagc |
165 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||| ||||| |||||||||| ||| ||||||||| |
|
|
| T |
7075196 |
tctttgatagcttatagtactccatttcaagatgcttttgtttattaaaggcatgcaagttgaaaagc |
7075263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 363
Target Start/End: Complemental strand, 7030833 - 7030801
Alignment:
| Q |
331 |
atatcatcaagaacaataagaaccttcatacgg |
363 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
|
|
| T |
7030833 |
atatcgtcaagaacaataagaaccttcatacgg |
7030801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 301
Target Start/End: Original strand, 7081381 - 7081445
Alignment:
| Q |
237 |
tacttgcttatctctagttattacaattattctactatcagattgaaaccaatcaagagttccaa |
301 |
Q |
| |
|
||||||||||||| ||||| ||||||| ||||||||| | | | |||||||||||| ||||||| |
|
|
| T |
7081381 |
tacttgcttatctttagttgttacaatgattctactacctgttccaaaccaatcaagtgttccaa |
7081445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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