View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18683_high_20 (Length: 365)
Name: NF18683_high_20
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18683_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 21 - 348
Target Start/End: Complemental strand, 3166043 - 3165716
Alignment:
| Q |
21 |
atatcacaatgtctaccaaatgagttatgctcacggagattcttttagtggaataccctttgaaaatttcatacaagttgtatgttatgtctcattgcat |
120 |
Q |
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| T |
3166043 |
atatcacaatgtctaccaaatgagctatgcttacggagattcttttagtggaataccctttgaaaatttcatacaagttgtatgttatgtctcattgcat |
3165944 |
T |
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| Q |
121 |
gatggtaaaattacaatgccagggattttttgtatgaggagcttaggaaaagaagagtagaagagctaaagaaagctattgaacgctctggagattcaat |
220 |
Q |
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| T |
3165943 |
gatggtaaaattacaatgccagggattttttgtatgaggagcttaggaaaagaagagtagaagagctaaagaaagctattgaacgctctggagattcaat |
3165844 |
T |
|
| Q |
221 |
tgggttagtttcatggttaactttctcttcgagcttagtatttgtgagtggacaataagtacacatacttattcttaaattctacaacatgtctccattt |
320 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3165843 |
tgggttagtttcatggttaactttctcttcaagcttagtatttgtgagtggacaataagtatacatacttattcttaaattctacaacatgtctccattt |
3165744 |
T |
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| Q |
321 |
gttctagttttgttttttctgcatgttc |
348 |
Q |
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||||||||||||||||| |||||||||| |
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| T |
3165743 |
gttctagttttgtttttcctgcatgttc |
3165716 |
T |
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