View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18683_high_23 (Length: 349)
Name: NF18683_high_23
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18683_high_23 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 8 - 333
Target Start/End: Original strand, 14658540 - 14658863
Alignment:
| Q |
8 |
tgatttttctagaactcccaccatggtcggaatatcatgacaacatgttattattattttttccttctctttttgaggtcaacacacttctccaaccagt |
107 |
Q |
| |
|
|||||||||||||| | ||||| ||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14658540 |
tgatttttctagaatttccaccgtggtcagaatttcatgacagcatgttattattattttttccttctctttttgaggtcaacacatttctccaaccagt |
14658639 |
T |
|
| Q |
108 |
gttgttagaaacaaagggcacatattcgatgatcatagcactaagttacttctgacctaattgatattccttttagctaaaaaccattatgtatgtttat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||| |||| |
|
|
| T |
14658640 |
gttgttagaaacaaagggcacatattcgatgatcatagtactaagttacttttgacctaattgatattctttttagctaaaaatcattatgtatgcttat |
14658739 |
T |
|
| Q |
208 |
aaatttgattttacatgatcttgattctacaaaattgatttcagtgtaaatacatttacgttgctgctggttactcttgggtcacatataattggagagt |
307 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||| || |||||||||| |
|
|
| T |
14658740 |
aaatttgattttgcatgatcttgattctacaaaattgatttcagtataaatacatttacattgttgctggttactcttgggtcac--attattggagagt |
14658837 |
T |
|
| Q |
308 |
ttcacataagaagttagacttataag |
333 |
Q |
| |
|
|||||||||||||| |||||| |||| |
|
|
| T |
14658838 |
ttcacataagaagtaagacttgtaag |
14658863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University