View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18683_high_24 (Length: 346)
Name: NF18683_high_24
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18683_high_24 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 11 - 346
Target Start/End: Original strand, 50264232 - 50264570
Alignment:
| Q |
11 |
cacagaaaccaccaccatgaaaatacactaacaaaggtagnnnnnnnngtgaagaatttggaacatagaaacgtgcccaaatgtttgtaacactgtcaat |
110 |
Q |
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| T |
50264232 |
cacagaaaccaccaccatgaaaatacactaacaaaggtagttttttttgtggagaatttggaacatagaaacgtgcccaaatgtttgtaacactgtcaat |
50264331 |
T |
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| Q |
111 |
gataatgtcccttgaagtcacatttatttttggacatagatcagaagtgacacatggaacaatgttgggtcgttctatatatccatctttgtgtacgtta |
210 |
Q |
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| T |
50264332 |
gataatgtcccttgaagtcacatttatttttggacatagatcagaagtgacacatggaacaatgttgggtcgttctatatatccatctttatgtacttta |
50264431 |
T |
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| Q |
211 |
attagccctttaatttcctcaacaacacaagaaccttgg---tgttgatggtttttaccatgttgtgggataaggtttaggtttgaggtaagagcagtca |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50264432 |
attagccctttaatttcctcaacaacacaagaaccttggtgttgttgatggtttttaccatgttgtgggataaggtttaggtttgaggtaagagcagtca |
50264531 |
T |
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| Q |
308 |
taggttttggtgattgaagcaagaaacaaaggaatgaat |
346 |
Q |
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| T |
50264532 |
taggttttggtgattgaagcaagaaacaaaggaatgaat |
50264570 |
T |
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