View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18683_high_26 (Length: 338)
Name: NF18683_high_26
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18683_high_26 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 330
Target Start/End: Complemental strand, 3900512 - 3900201
Alignment:
| Q |
19 |
tgttattttgttgagttggacctgttgggattaattccttttacaatatattgtagttnnnnnnnnnnnntacttcacttccttccacaatcaactaaaa |
118 |
Q |
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| T |
3900512 |
tgttattttgttgagttggacctgttgggattaattccttttacaatatattgtagttaaaaaacaaaaatacttcacttccttccacaatcaactaaaa |
3900413 |
T |
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| Q |
119 |
tggttgcatcaccgtaatccaactaccaagaaagtagaaggttatggcttcacctgaatgaattctatgaattgtagagaaaacaatttttagattgttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3900412 |
tggttgcatcaccgtaatccaactaccaagaaagtagaaggttatggcttcacctgaatgaattctatgaattgtagagaaaacaatttttagattgttt |
3900313 |
T |
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| Q |
219 |
agaagcaccgattaggtatattttggtgttgaaaatggatttggtgttagaaaataaaggcatcaaaattgcnnnnnnnttggagacataactacctgta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
3900312 |
agaagcaccgattaggtatattttggtgttgaaaatggatttggtgttagaaaataaaggcatcaaaagtgcaaaaaaattggagacataactacctgta |
3900213 |
T |
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| Q |
319 |
gatttgtagtat |
330 |
Q |
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|||||||||||| |
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| T |
3900212 |
gatttgtagtat |
3900201 |
T |
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