View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18683_high_3 (Length: 583)
Name: NF18683_high_3
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18683_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 9 - 568
Target Start/End: Complemental strand, 2516091 - 2515532
Alignment:
| Q |
9 |
gaagaatataagcgtagaaggattggtggtgaaagaatggtcgtacagggtagaggtagggctccattaggttcactcaacaacagatcagacgctaatg |
108 |
Q |
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| T |
2516091 |
gaagaaaataagcgtagaaggattggtggtgaaagaatggtcgtacagggtagaggtagggctccattaggttcactcaacaacagatcagacgctaatg |
2515992 |
T |
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| Q |
109 |
atggtgccggtgggggtgcaaccgagggatctgagccaagcatcattgaattcaccaaagaggaagtagaagctttattgactgagaagatgaaaaaggg |
208 |
Q |
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| T |
2515991 |
atggtgccggtggcggtgcaaccgagggatctgagccaagcatcattgaattcaccaaagaggaagtagaagctttattgactgagaagatgaaaaaggg |
2515892 |
T |
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| Q |
209 |
gaatccccttgatactaaggtatctttctctcatttttactgtatcactgagttttggtgttagtaaagcttatatgggggttgatttttgatttgcagn |
308 |
Q |
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| T |
2515891 |
gaatccccttgatactaaggtatctttctctcatttttactgtatcactgagttttggtgttagtaaagcttatatgggggttgatttttgatttgcaga |
2515792 |
T |
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| Q |
309 |
nnnnnntggagcagatggtggatcttattaagcgacttaaaaactgcgttagatggtttaaggtagttgaagaagggtatattaaagaaaaagaaaagct |
408 |
Q |
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| T |
2515791 |
aaaaaatggagcagatggtggatcttattaagcgacttaaaaactgcgttagatggtttaaggtagttgaagaagggtatattaaagaaaaagaaaagct |
2515692 |
T |
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| Q |
409 |
tcagacagatctagaatctgctgagaaaaaatgcgttgatactggtgagcctctacttatttgtgttttgtgcatcgagggttttaggcattgttgtatg |
508 |
Q |
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| T |
2515691 |
tcagacagatctagaatctgccgagaaaaaatgcgttgatactggtgagcctctacttatttgtgttttgtgcatcgagggttttaggcattgttgtatg |
2515592 |
T |
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| Q |
509 |
gcatttggtagtaacagtgaagaatgtagtataagtagattacttatgataggaaagttt |
568 |
Q |
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| T |
2515591 |
gcatttggtagtaacagtgaagaatgtagtataagtagattacttatgataggaaagttt |
2515532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Original strand, 36577819 - 36577852
Alignment:
| Q |
315 |
tggagcagatggtggatcttattaagcgacttaa |
348 |
Q |
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| T |
36577819 |
tggagcagatggtggatcttattaagcggcttaa |
36577852 |
T |
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