View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18683_high_35 (Length: 285)
Name: NF18683_high_35
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18683_high_35 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 13 - 270
Target Start/End: Complemental strand, 2515789 - 2515532
Alignment:
| Q |
13 |
aaaatggagcagatggtggatcttattaagcgacttaaaaactgcgttagatggtttaaggtagttgaagaagggtatattaaagaaaaagaaaagcttc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2515789 |
aaaatggagcagatggtggatcttattaagcgacttaaaaactgcgttagatggtttaaggtagttgaagaagggtatattaaagaaaaagaaaagcttc |
2515690 |
T |
|
| Q |
113 |
agacagatctagaatctgctgagaaaaaatgcgttgatactggtgagcctctacttatttgtgttttgtgcatcgagggttttaggcattgttgtatggc |
212 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2515689 |
agacagatctagaatctgccgagaaaaaatgcgttgatactggtgagcctctacttatttgtgttttgtgcatcgagggttttaggcattgttgtatggc |
2515590 |
T |
|
| Q |
213 |
atttggtagtaacagtgaagaatgtagtataagtagattacttatgataggaaagttt |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2515589 |
atttggtagtaacagtgaagaatgtagtataagtagattacttatgataggaaagttt |
2515532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 36577815 - 36577852
Alignment:
| Q |
13 |
aaaatggagcagatggtggatcttattaagcgacttaa |
50 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36577815 |
aaaatggagcagatggtggatcttattaagcggcttaa |
36577852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University