View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18683_high_38 (Length: 279)
Name: NF18683_high_38
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18683_high_38 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 49484529 - 49484276
Alignment:
| Q |
18 |
caaacgatatatatgactagtttagggattctagnnnnnnnn-aatcccaattaagcaatgcatccaagtttaaaaaataggccgagatcttaacatcat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49484529 |
caaacgatatatatgactagtttagggattctagtttttttttaatcccaattaagcaatgcatccaagtttaaaaaataggccgagatcttaacatcat |
49484430 |
T |
|
| Q |
117 |
tgcaggtaatgaaaatgcactatagtcctacgggttcatcaaggaaaatcaacttgataagctcggatggggatatgtttgaagttgactacgatgttgc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49484429 |
tgcaggtaatgaaaatgcactatagtcctacgggttcatcaaggaaaatcaacttgataagctcggatggggatatgtttgaagttgactacgatgttgc |
49484330 |
T |
|
| Q |
217 |
acttatgtcaaaagcaattgaggatgctattgagacggatcctactgatgatgt |
270 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
49484329 |
acttatgtcaaaaacaattgaggatgctattgagacagatcctactggtgatgt |
49484276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University