View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18683_high_39 (Length: 277)
Name: NF18683_high_39
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18683_high_39 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 31602585 - 31602836
Alignment:
| Q |
18 |
gtatcaatcatgcatggtcgaagaaagtattttcgttcatcgttggtcatctctttctactgtacaccctgagtttttgatttacaatgaaaaatatcca |
117 |
Q |
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| T |
31602585 |
gtatccatcatgcatggtcgaagaaagtattttcgttcatcgttggtcatcactttctactgtacaccctgagtttttgatttacaatgaaaaatatcca |
31602684 |
T |
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| Q |
118 |
tgtctaagagagaccatatctgcatggagtaactagtatgtccatgtctgaaatctgttcaaaaatacatgtcatcccctcctgaaagtattatgaggag |
217 |
Q |
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| T |
31602685 |
tgtctaagagagaccatatctgcatggagtaactagtatgtccatgtctgaaatctgttcaaaaatacatgtcatcccctcctgaaagtattatgaggag |
31602784 |
T |
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| Q |
218 |
agaagatttcgatnnnnnnnggattgaaaatcttatcagcaagtgatgatgt |
269 |
Q |
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| T |
31602785 |
agaagatttcgataaaaaaaggattgaaaatcttatcagcaagttatgatgt |
31602836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 22 - 108
Target Start/End: Original strand, 31605024 - 31605110
Alignment:
| Q |
22 |
caatcatgcatggtcgaagaaagtattttcgttcatcgttggtcatctctttctactgtacaccctgagtttttgatttacaatgaa |
108 |
Q |
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| T |
31605024 |
caatcatgcatggtcgaagaaagtattttccttcatcgttggccatcagtttctattctacaccatgagtttttgatttacaatgaa |
31605110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 126 - 222
Target Start/End: Original strand, 31605157 - 31605253
Alignment:
| Q |
126 |
agagaccatatctgcatggagtaactagtatgtccatgtctgaaatctgttcaaaaatacatgtcatcccctcctgaaagtattatgaggagagaag |
222 |
Q |
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| T |
31605157 |
agagaacatatctgcatggagtaatgagtgtgtccatgttcaaaatctgttcgaaaatacatgtcatcccctccttaacgtattttaaggagagaag |
31605253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 49778213 - 49778303
Alignment:
| Q |
18 |
gtatcaatcatgcatggtcgaagaaagtattttcgttcatcgttggtcatctctttctactgtacaccctgagtttttgatttacaatgaa |
108 |
Q |
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| T |
49778213 |
gtatcagtcatgcatggttgatgaaagtattttcattcatcgttggtcatcagtttctactgtacaccccgagtttctggtttacaatgaa |
49778303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 7991098 - 7991009
Alignment:
| Q |
18 |
gtatcaatcatgcatggtcgaagaaagtattttcgttcatcgttggtcatctctttctactgtacaccctgagtttttgatttacaatga |
107 |
Q |
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| T |
7991098 |
gtatcagtcatgcatggttgatgaaagtattttcattcatcgttggtcatcggtctctactgtacgccccgagtttctggtttacaatga |
7991009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 49778608 - 49778670
Alignment:
| Q |
160 |
catgtctgaaatctgttcaaaaatacatgtcatcccctcctgaaagtattatgaggagagaag |
222 |
Q |
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| T |
49778608 |
catgtttgaaatcagttcgaaaatacatgtcagcccctcctgaaactattttgaggagagaag |
49778670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 7990707 - 7990642
Alignment:
| Q |
156 |
tgtccatgtctgaaatctgttcaaaaatacatgtcatcccctcctgaaagtattatgaggagagaa |
221 |
Q |
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| T |
7990707 |
tgtccatgcctgaaaacagttcgaaaatacatgtcagcccctcctgaaactattttgaggagagaa |
7990642 |
T |
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