View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18683_high_40 (Length: 273)

Name: NF18683_high_40
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18683_high_40
NF18683_high_40
[»] chr2 (6 HSPs)
chr2 (132-254)||(14662180-14662296)
chr2 (36-98)||(14662328-14662390)
chr2 (147-185)||(14646408-14646446)
chr2 (36-98)||(45338572-45338634)
chr2 (201-254)||(14645955-14646008)
chr2 (36-98)||(45336260-45336322)
[»] chr7 (2 HSPs)
chr7 (36-98)||(13108908-13108970)
chr7 (36-98)||(13111201-13111263)
[»] chr3 (5 HSPs)
chr3 (36-98)||(48024085-48024147)
chr3 (36-98)||(48025196-48025258)
chr3 (36-98)||(48027376-48027438)
chr3 (36-98)||(48024636-48024698)
chr3 (36-98)||(28784514-28784576)
[»] chr6 (1 HSPs)
chr6 (36-98)||(6723461-6723523)
[»] chr5 (2 HSPs)
chr5 (36-98)||(32798007-32798069)
chr5 (36-98)||(32800319-32800381)
[»] chr1 (2 HSPs)
chr1 (36-97)||(9535257-9535318)
chr1 (36-98)||(1550157-1550219)
[»] chr8 (2 HSPs)
chr8 (36-98)||(44731842-44731904)
chr8 (36-98)||(44734153-44734215)
[»] chr4 (1 HSPs)
chr4 (36-98)||(22804610-22804672)


Alignment Details
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 132 - 254
Target Start/End: Complemental strand, 14662296 - 14662180
Alignment:
Q  132 tatcaatctccaacagcatccaaggagcaaacaccagaagtgacctcaacctgannnnnnnnnnnnnnntcagacacatatttatcttcgataatgttgc 231  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||               ||||||| |||||||||||||||||||||||    
T  14662296 tatcaatctccaacagcatccaaagagcaaacaccagaagtgacctcaacctgatctctctct------tcagacagatatttatcttcgataatgttgc 14662203  T
Q  232 caaacctgctagaatgtctagaa 254  Q
    |||||||||||||||||||||||    
T  14662202 caaacctgctagaatgtctagaa 14662180  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 14662390 - 14662328
Alignment:
Q  36 acttactaaataagcaactatctaattatgacacttatacataaacaagcaacactttaatta 98  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  14662390 acttactaaataagcaacgatctaattatgacacttatacataaacaagcaacactttaatta 14662328  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 14646446 - 14646408
Alignment:
Q  147 gcatccaaggagcaaacaccagaagtgacctcaacctga 185  Q
    |||||||||||||||||||||||||||||||||||||||    
T  14646446 gcatccaaggagcaaacaccagaagtgacctcaacctga 14646408  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 45338634 - 45338572
Alignment:
Q  36 acttactaaataagcaactatctaattatgacacttatacataaacaagcaacactttaatta 98  Q
    |||||| ||||||||||| |||||| ||||||||||| || |||||||||||||| |||||||    
T  45338634 acttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatta 45338572  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 14646008 - 14645955
Alignment:
Q  201 tcagacacatatttatcttcgataatgttgccaaacctgctagaatgtctagaa 254  Q
    |||||||||| |||||||||||| |||||| ||||||||||||||||| |||||    
T  14646008 tcagacacatgtttatcttcgatcatgttgtcaaacctgctagaatgtttagaa 14645955  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 45336322 - 45336260
Alignment:
Q  36 acttactaaataagcaactatctaattatgacacttatacataaacaagcaacactttaatta 98  Q
    |||||| ||||||||||| |||||| ||||||||||| || || ||||||||||| |||||||    
T  45336322 acttaccaaataagcaacaatctaaatatgacacttaaacttacacaagcaacacattaatta 45336260  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 13108908 - 13108970
Alignment:
Q  36 acttactaaataagcaactatctaattatgacacttatacataaacaagcaacactttaatta 98  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  13108908 acttactaaataagcaacaatctaattatgacacttataaataaacaagcaacactttaatta 13108970  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 13111201 - 13111263
Alignment:
Q  36 acttactaaataagcaactatctaattatgacacttatacataaacaagcaacactttaatta 98  Q
    |||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||    
T  13111201 acttactaaataagcaacaatctaattatggcacttctacataaacaagcaacactttaatta 13111263  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 48024085 - 48024147
Alignment:
Q  36 acttactaaataagcaactatctaattatgacacttatacataaacaagcaacactttaatta 98  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  48024085 acttactaaataagcaacaatctaattatgacacttatacataaacaagtaacactttaatta 48024147  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 48025196 - 48025258
Alignment:
Q  36 acttactaaataagcaactatctaattatgacacttatacataaacaagcaacactttaatta 98  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  48025196 acttactaaataagcaacaatctaattatgacatttatacataaacaagcaacactttaatta 48025258  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 48027376 - 48027438
Alignment:
Q  36 acttactaaataagcaactatctaattatgacacttatacataaacaagcaacactttaatta 98  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  48027376 acttactaaataagcaacaatctaattatgacacttatacataaacaagcaacacttaaatta 48027438  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 48024636 - 48024698
Alignment:
Q  36 acttactaaataagcaactatctaattatgacacttatacataaacaagcaacactttaatta 98  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||    
T  48024636 acttactaaataagcaacaatctaattatgacacttatacataaacatgcaacattttaatta 48024698  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 28784576 - 28784514
Alignment:
Q  36 acttactaaataagcaactatctaattatgacacttatacataaacaagcaacactttaatta 98  Q
    |||||| ||||||||||| |||||| ||| ||||||| || |||||||||||||| |||||||    
T  28784576 acttaccaaataagcaacaatctaactataacacttaaacttaaacaagcaacacattaatta 28784514  T

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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 6723523 - 6723461
Alignment:
Q  36 acttactaaataagcaactatctaattatgacacttatacataaacaagcaacactttaatta 98  Q
    |||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||    
T  6723523 acttactaaataagcaacaatctaattatgacacttacacttaaacaagcaacactttaatta 6723461  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 32798069 - 32798007
Alignment:
Q  36 acttactaaataagcaactatctaattatgacacttatacataaacaagcaacactttaatta 98  Q
    |||||| ||||||||||| |||||||||||||||||| || |||||||||||||| |||||||    
T  32798069 acttaccaaataagcaacaatctaattatgacacttaaacttaaacaagcaacacattaatta 32798007  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 32800381 - 32800319
Alignment:
Q  36 acttactaaataagcaactatctaattatgacacttatacataaacaagcaacactttaatta 98  Q
    |||||| ||||||||||| |||||||||||||||||| || |||||||||||||| |||||||    
T  32800381 acttaccaaataagcaacaatctaattatgacacttaaacttaaacaagcaacacattaatta 32800319  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 9535318 - 9535257
Alignment:
Q  36 acttactaaataagcaactatctaattatgacacttatacataaacaagcaacactttaatt 97  Q
    |||||| ||||||||||| |||||||||||||||||| || |||||||||||||| ||||||    
T  9535318 acttaccaaataagcaacaatctaattatgacacttaaacttaaacaagcaacacattaatt 9535257  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 1550219 - 1550157
Alignment:
Q  36 acttactaaataagcaactatctaattatgacacttatacataaacaagcaacactttaatta 98  Q
    |||||| ||||||||||| |||||| ||||||||||| || || ||||||||||| |||||||    
T  1550219 acttaccaaataagcaacaatctaactatgacacttaaacttatacaagcaacacattaatta 1550157  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 44731904 - 44731842
Alignment:
Q  36 acttactaaataagcaactatctaattatgacacttatacataaacaagcaacactttaatta 98  Q
    |||||| ||||||||||| |||||| ||||||||||| || |||||||||||||| |||||||    
T  44731904 acttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaatta 44731842  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 44734215 - 44734153
Alignment:
Q  36 acttactaaataagcaactatctaattatgacacttatacataaacaagcaacactttaatta 98  Q
    |||||| ||||||||||| | |||| ||||||||||| || |||||||||||||| |||||||    
T  44734215 acttaccaaataagcaacaacctaactatgacacttaaacttaaacaagcaacacattaatta 44734153  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 22804672 - 22804610
Alignment:
Q  36 acttactaaataagcaactatctaattatgacacttatacataaacaagcaacactttaatta 98  Q
    |||||| ||||||||| | ||||||||||| |||||| || |||||||||||| | |||||||    
T  22804672 acttaccaaataagcagcaatctaattatggcacttaaacttaaacaagcaacgcattaatta 22804610  T

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