View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18683_high_46 (Length: 250)
Name: NF18683_high_46
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18683_high_46 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 8718877 - 8718639
Alignment:
| Q |
1 |
ttcaagacttggaagctttcattagatgctcatcactaggctgaatgttgcttcaatcaagctgattcatttttccatgacatagctgctgctgttttta |
100 |
Q |
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| T |
8718877 |
ttcaagacttggaagctttcattagatgctcatcactaggctgaatgttgcttcaatcaagctgattcatttttccatgacatagctgctgctgttttta |
8718778 |
T |
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| Q |
101 |
tcgtcagaacatgatagttctaatttatttggagtgaaaaatagaggattattggtatcattattattatacatttattctcttggtatttagtcaaata |
200 |
Q |
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| T |
8718777 |
tcgtcagaacatgatagttctaatttatttggagtgaaaaatagaggattattggtatcattattattatacatttattctcttggtatttagtcaaata |
8718678 |
T |
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| Q |
201 |
tttgtgtattttcttttttacacacattatttatttcat |
239 |
Q |
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| T |
8718677 |
tttgtgtattttcttttttacacacattatttatttcat |
8718639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 8672567 - 8672322
Alignment:
| Q |
1 |
ttcaagacttggaagctttcattagatgctcatcactaggctgaatgttgcttcaatcaagctgattcatttttccatgacatagctgctgctgttttta |
100 |
Q |
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| T |
8672567 |
ttcaagatttggaagctttcattaaatgctcatcattagactaaatgttgcttcaatcaagctgattcatttttccatgacatagctgctgctgttttta |
8672468 |
T |
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| Q |
101 |
t--cgtcagaacatgatagttctaatttatttggagtgaaaaatagaggattattggtatcattattattatacatttattctcttggtatttagtcaaa |
198 |
Q |
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| T |
8672467 |
tatcgtcagaacatgatagttctaatttatttggagtgaaaaatagaggattattggtatcattattattatacatttattctcttggtatttagtcaaa |
8672368 |
T |
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| Q |
199 |
tatttgtgtattttcttttttacacacattatttatttcatctcac |
244 |
Q |
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| T |
8672367 |
tatttgtgtattttcttttttacacacattatttatttcatgtcac |
8672322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 8590909 - 8590843
Alignment:
| Q |
139 |
aaatagaggattattggtatcattattattatacatttattctcttggtatttagtcaaatatttgtgta |
208 |
Q |
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| T |
8590909 |
aaatagagggttattggtatcattattag---acatttattctcttgttattaagtcaaatatttctgta |
8590843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 141
Target Start/End: Complemental strand, 8590958 - 8590925
Alignment:
| Q |
108 |
aacatgatagttctaatttatttggagtgaaaaa |
141 |
Q |
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| T |
8590958 |
aacatgatagttctaatttatttggagtgaaaaa |
8590925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 23440037 - 23440104
Alignment:
| Q |
1 |
ttcaagacttggaagctttcattagatgctcatcactaggctgaatgttgcttcaatcaagctgattc |
68 |
Q |
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||||||| || |||||||||||||||||||||||||| | ||||| ||||||| ||||||| |||||| |
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| T |
23440037 |
ttcaagattttgaagctttcattagatgctcatcactggactgaaagttgctttaatcaagttgattc |
23440104 |
T |
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