View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18683_high_6 (Length: 522)
Name: NF18683_high_6
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18683_high_6 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 470; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 17 - 522
Target Start/End: Original strand, 37080191 - 37080696
Alignment:
| Q |
17 |
aaaaatcaatcttggtgacaaaaactccaaattataatcaatatgggagtgaaaatcaactctacttcgaagcactcaaacatgtcaaaaccaattctac |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
37080191 |
aaaaatcaatcttggtgacaaaaactccaaattataatcaatatgggagagaaaatcaactctactttgaagcactcaaacatgtcaaaaccaattctac |
37080290 |
T |
|
| Q |
117 |
atacctctctagcggacgaattacgaagttttgaacttgcattgataacttcaacagctgtttggttgttttggttaaccagctgaagatccactctttc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
37080291 |
atacctctctagcggacgaattacgaagttttgaacttgcattgataacttcaacagctgtttggttgttttggttaaccagctgcatatccactctttc |
37080390 |
T |
|
| Q |
217 |
atcccatgttaagtaaaaaacagctttgggatgacacgattgtgcagccagatgcaaaggactatctcctttattatccttttgatttatcattttatca |
316 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37080391 |
atcccatgttaagtaaaaaacagctttaggatgacacgattgtgcagccagatgcaaaggagtatctcctttattatccttttgatttatcattttatca |
37080490 |
T |
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| Q |
317 |
agttcacaaattcgacgactttgttgtagtatgtaatctactacctcatgttttccatggtatgctgccacatgaagaatattacgcttaaatgaagtgt |
416 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
37080491 |
agttcgcaaattcgacgactttgttgtagtatgtaatctactacctcatgttttccattgtatgctgcaacatgaagaatattacgcttaaatgaagtgt |
37080590 |
T |
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| Q |
417 |
caagcatctctgtgggatctggacagtattctaacaacttctctactacttccacatggccaccatatgatgctagatgaattgggaaatagccatattt |
516 |
Q |
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| T |
37080591 |
caagcatctctgtgggatctggacagtattctaacaacttctctactacttccacatggccaccatatgatgctagatgaattgggaaatagccatattt |
37080690 |
T |
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| Q |
517 |
gtccct |
522 |
Q |
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|||||| |
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| T |
37080691 |
gtccct |
37080696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 93 - 522
Target Start/End: Original strand, 37070434 - 37070863
Alignment:
| Q |
93 |
caaacatgtcaaaaccaattctacatacctctctagcggacgaattacgaagttttgaacttgcattgataacttcaacagctgtttggttgttttggtt |
192 |
Q |
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||||| |||||||| ||||| || ||||||||| | ||| | || ||||| || ||| ||||||||| || ||||| ||||||||| ||||||||||| |
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| T |
37070434 |
caaacctgtcaaaatcaattacacttacctctcttgtggatgtatcacgaaattgagaaattgcattgacaaattcaagagctgtttgattgttttggtt |
37070533 |
T |
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| Q |
193 |
aaccagctgaagatccactctttcatcccatgttaagtaaaaaacagctttgggatgacacgattgtgcagccagatgcaaaggactatctcctttatta |
292 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||| ||| |
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| T |
37070534 |
aaccagatgaagatccactctttcatcccatgttaagtaaaaaacagttttgggatgacacgattttgcagccagatgcaaaggagtatctcctttctta |
37070633 |
T |
|
| Q |
293 |
tccttttgatttatcattttatcaagttcacaaattcgacgactttgttgtagtatgtaatctactacctcatgttttccatggtatgctgccacatgaa |
392 |
Q |
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||||||||||||||||| |||| ||||||| ||||||||||||||| | ||||||| | ||||| |||||| ||||||| | |||||| ||||||| |
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| T |
37070634 |
tccttttgatttatcatcttatgaagttcaggaattcgacgactttgcagcagtatgtgttgtactagctcatgctttccattttttgctgcaacatgaa |
37070733 |
T |
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| Q |
393 |
gaatattacgcttaaatgaagtgtcaagcatctctgtgggatctggacagtattctaacaacttctctactacttccacatggccaccatatgatgctag |
492 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||| || ||||| |||| |||||||| |
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| T |
37070734 |
gaatattacgcttaaatgaagtgtcaagcatctcagtgggatctggacagtattctaacaacttctttaccactttcaagtggcctccatgagatgctag |
37070833 |
T |
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| Q |
493 |
atgaattgggaaatagccatatttgtccct |
522 |
Q |
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| T |
37070834 |
atgaattgagaaatagccatatttgtccct |
37070863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 245 - 522
Target Start/End: Complemental strand, 36953848 - 36953577
Alignment:
| Q |
245 |
ggatgacacgattgtgcagccagatgcaaaggactatctcctttattatccttttgatttatcattttatcaagttcacaaattcgacgactttgttgta |
344 |
Q |
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|||||||| ||| ||| |||| ||||||||| |||||||||||||||| |||||||||||||| |||| | |||||| | || ||| ||||| |
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| T |
36953848 |
ggatgacatgatcttgctgccaaatgcaaaggggtatctcctttattatctttttgatttatcatcttataacgttcactactttgact------ttgta |
36953755 |
T |
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| Q |
345 |
gtatgtaatctactacctcatgttttccatggtatgctgccacatgaagaatattacgcttaaatgaagtgtcaagcatctctgtgggatctggacagta |
444 |
Q |
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| ||||| | || ||||||| |||||||| || || ||| | |||||||||||||||| | |||||||||||||||||||||||||| ||||| || |
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| T |
36953754 |
gaatgtattgcaccacctcatattttccatagtttgatgcaatgtgaagaatattacgctcatgagaagtgtcaagcatctctgtgggatcaggacaata |
36953655 |
T |
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| Q |
445 |
ttctaacaacttctctactacttccacatggccaccatatgatgctagatgaattgggaaatagccatatttgtccct |
522 |
Q |
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||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
36953654 |
ttccaacaacttcttcactacttccacatggccaccatacgatgctagatgaattgggaaataaccatatttgtccct |
36953577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 411 - 522
Target Start/End: Complemental strand, 36947254 - 36947143
Alignment:
| Q |
411 |
aagtgtcaagcatctctgtgggatctggacagtattctaacaacttctctactacttccacatggccaccatatgatgctagatgaattgggaaatagcc |
510 |
Q |
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||||||| ||||||||| ||||||| ||||| ||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
36947254 |
aagtgtcgagcatctctctgggatcaggacaatattccaacaacttcttcactacttccacatggccaccataagatgctagatgaattgggaaataacc |
36947155 |
T |
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| Q |
511 |
atatttgtccct |
522 |
Q |
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|| |||||||| |
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| T |
36947154 |
attattgtccct |
36947143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 8e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 260 - 507
Target Start/End: Original strand, 12494413 - 12494654
Alignment:
| Q |
260 |
gcagccagatgcaaaggactatctcctttattatccttttgatttatcattttatcaagttcacaaattcgacgactttgttgtagtatgtaatctacta |
359 |
Q |
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||||||| ||||||||| |||||||||||||||| |||||||||||||| ||||||||| || |||| ||| |||||| ||||| | || | |
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| T |
12494413 |
gcagccaaatgcaaaggggtatctcctttattatctttttgatttatcatcttatcaagtccaggaatttgact------ttgtagaatgtattgcacca |
12494506 |
T |
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| Q |
360 |
cctcatgttttccatggtatgctgccacatgaagaatattacgcttaaatgaagtgtcaagcatctctgtgggatctggacagtattctaacaacttctc |
459 |
Q |
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| T |
12494507 |
cctcatattttccatattttgatgcaacatgaagaatattacgtttatgagaagtgtcaagcatctctgtgggatcaggacaatattctaacaacttttt |
12494606 |
T |
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| Q |
460 |
tactacttccacatggccaccatatgatgctagatgaattgggaaata |
507 |
Q |
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| T |
12494607 |
cactacttccacatggccaccatatgatgctacatgaattgggaaata |
12494654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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