View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18683_high_9 (Length: 482)
Name: NF18683_high_9
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18683_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 19 - 462
Target Start/End: Complemental strand, 38209401 - 38208954
Alignment:
| Q |
19 |
ctcttgcatgtgtctaccctaggtggtgggcactagtcgcattaaagaagttgctcaaacccctaggattgttgcaaccaataaaatgaagagtcaattt |
118 |
Q |
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| T |
38209401 |
ctcttgcatgtgtctaccctaggtggtgggcactagtcgcattaaagaagttgctcaaacccctaggatttttgcaaccaataaaatgaagagtcaattt |
38209302 |
T |
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| Q |
119 |
atcatgcatcatattcttaactgcttcacctacattttatcaaaggagggtcttcataaagaattttcatgtccatctactacgcatagcaactggacca |
218 |
Q |
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| T |
38209301 |
atcatgcatcaaattcttaactgcttcccctacattttatcaaaggagggtcttcataaagaattttcatgtccatctactacgcatagcaactggacca |
38209202 |
T |
|
| Q |
219 |
aatcacctctttcagatggaaatttagctttaatgcggactccaaaaatcaaaacagtgccatttccaaaatcttgcaagagataggattccatcactac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
38209201 |
aatcacctctttcagatggaaatttagctttaatgcggactccaaaaatcaaaacagtgccatttccaaaatcttgcaagagataggattccatcactgc |
38209102 |
T |
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| Q |
319 |
caaatttgaacagatatttaattaataa---taatcatagatgatagtaatatctgttggggggagaaaagtatttataaactttgatgataagttagat |
415 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| |
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| T |
38209101 |
caaatttgaacagatatttaattaataataataatcatagatgatagtaatatctgttaggggaagaaaagtatttataaactttgatgataagtcagat |
38209002 |
T |
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| Q |
416 |
cattgatattttttaggtctaatgcatctaaa-atcctttaagttttt |
462 |
Q |
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| T |
38209001 |
cattgatattttttagatcaaatgcatttaaagatcctttaaattttt |
38208954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 422 - 463
Target Start/End: Original strand, 39699856 - 39699897
Alignment:
| Q |
422 |
tattttttaggtctaatgcatctaaaatcctttaagtttttc |
463 |
Q |
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| T |
39699856 |
tatttattaggtcaaatgcatctaaaatcatttaagtttttc |
39699897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 465
Target Start/End: Complemental strand, 31208983 - 31208943
Alignment:
| Q |
425 |
tttttaggtctaatgcatctaaaatcctttaagtttttcat |
465 |
Q |
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| T |
31208983 |
tttttaggtcaaatgcatctaaggtcctttaagtttttcat |
31208943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 465
Target Start/End: Original strand, 43968156 - 43968200
Alignment:
| Q |
421 |
atattttttaggtctaatgcatctaaaatcctttaagtttttcat |
465 |
Q |
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| T |
43968156 |
atattttttaggtcaaatgcatctaaaggtctttaagtttttcat |
43968200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 465
Target Start/End: Complemental strand, 14717845 - 14717805
Alignment:
| Q |
426 |
ttttaggtctaatgcatctaaaa-tcctttaagtttttcat |
465 |
Q |
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| T |
14717845 |
ttttaggtcaaatgcatctaaaagtcctttaagtttttcat |
14717805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 465
Target Start/End: Original strand, 11949328 - 11949368
Alignment:
| Q |
426 |
ttttaggtctaatgcatctaaaa-tcctttaagtttttcat |
465 |
Q |
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| T |
11949328 |
ttttaggtcaaatgcatctaaaagtcctttaagtttttcat |
11949368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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