View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18683_low_1 (Length: 838)
Name: NF18683_low_1
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18683_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 764; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 764; E-Value: 0
Query Start/End: Original strand, 14 - 820
Target Start/End: Original strand, 47280768 - 47281575
Alignment:
| Q |
14 |
cacagaccaaacaaactgggactccttattccgaattacatgctgccaaatgttccttagctcctccaatctcacaggtttcagcagaaaatcacaggca |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
47280768 |
cacagaccaaacaaactgggactccttattccgaattacatgctgccaaatgttccttagctcctccaatctcacaggtttcagcagaaaatcacgggca |
47280867 |
T |
|
| Q |
114 |
ccgtgggaaattgccttcatcaccagctccgtttcaccatgagcagacaacactgaaatcaaacaatttataacaacaatcattgattaataattatata |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47280868 |
ccgtgggaaattgccttcatcaccagctccgtttcaccatgtgcagacaacactgaaatcaaacaatttataacaacaatcattgattaataattatata |
47280967 |
T |
|
| Q |
214 |
aataaatgagagtgaaaatgaagaaacagaacaaagatgaagagctgaaaattataaaacagatcctcccaacttacttatgacaggaagatccatttca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
47280968 |
aataaatgagagtgaaaatgaagaaacagaacaaagatgaagagctgaaaattataaaacagatccccccaacttacttatgacaggaagatccatttca |
47281067 |
T |
|
| Q |
314 |
agtcctacaagttccagcagcttgagtccatccatgtcaggcatgtgaacttcagcgattaccaggtcaaacatgtctatgttttctcgcaacatagtca |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
47281068 |
agtcctacaagttccagcagcttgagtccatccatgtcaggcatgtgaacttcagcgattaccaggtcaaacatgtctatgttttcttgcaacatagtca |
47281167 |
T |
|
| Q |
414 |
atgcagttattgcttcactagttgtggttactgcaatcccaagtcaaaaataaataagatagatattattcagaacgagcaaa-tacactttgcatgtat |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
47281168 |
atgcagttattgcttcactagttgtggttactgcaatcccaagtcaaaaataaataagatagatattattcagaacgagcaaagtacactttgcatgtat |
47281267 |
T |
|
| Q |
513 |
atccaggactagaacagagcaattgtgatatacttgaaaaacaaaaattctaaccatgtggaaatagagagattctgaaatccaagcaataacaggtaca |
612 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47281268 |
atccaggactagaacagagcaattgtgaaatacttgaaaaacaaaaattctaaccatgtagaaatagagagattctgaaatccaagcaataacaggtaca |
47281367 |
T |
|
| Q |
613 |
aagtataataaaataattaaccatatctctcggcacataaatttgacataaagtatcaaaaaagaagcagaccgtggtattgacatgatcggaggagagt |
712 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47281368 |
aagtataataaaataattaaccatatctctcggcacataaatttgacataaagtataaaaaaagaagcagaccgtggtattgacatgatcggaggagagt |
47281467 |
T |
|
| Q |
713 |
ttccaaaagcaagagagaagtaggatcatcgtcaacggcaagaacacgcattccgatgggaaactgatcactggaatcatccattattctctcttctcta |
812 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
47281468 |
ttccaaaagcaagagagaagtaggatcatcgtcaacggcaagaacacgcattccgatgggaaaccgatcactgaaatcatccattattctctcttctcta |
47281567 |
T |
|
| Q |
813 |
ctatgcac |
820 |
Q |
| |
|
|||||||| |
|
|
| T |
47281568 |
ctatgcac |
47281575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 42 - 453
Target Start/End: Original strand, 47275111 - 47275529
Alignment:
| Q |
42 |
ttccgaattacatgctgccaaatgttccttagctcctccaatctcacaggtttcagcagaaaatcacaggcaccgtgggaaattgccttcatcaccagct |
141 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||| |||||||||||||||| |||||||||| ||||||| ||| ||| |||||||||||| |||| |
|
|
| T |
47275111 |
ttccgaattacatgctgccaaatggtctttagctcctgtaatctcacaggtttcaccagaaaatcagaggcaccatggaaaactgccttcatcactagct |
47275210 |
T |
|
| Q |
142 |
ccgtttcaccatgagcagacaacactgaaatcaaacaattta---taac--aacaatcattgattaataattatataaataaatgagagtgaaaatgaag |
236 |
Q |
| |
|
| | || | | |||||||||||||||| |||||| | | || ||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
47275211 |
cattatcgctagattcagacaacactgaaataaaacaacaaacgttcaccaaacaatcattgattaataattatatgaataaatgagagtgaaaatgaag |
47275310 |
T |
|
| Q |
237 |
aaacagaacaaagatgaagagctgaaaattataaaacagatcctcccaacttacttatgaca---ggaagatccatttcaagtcctacaagttccagcag |
333 |
Q |
| |
|
||||| | |||||||||||| ||||| |||| | ||||||||| |||| |||||||| ||| ||||| ||| | |||||| | |||||||| ||||| |
|
|
| T |
47275311 |
aaacaaagcaaagatgaagaactgaagattacagaacagatcccccca-cttacttacgacgaccggaaggtccgtctcaagttccacaagttcaagcag |
47275409 |
T |
|
| Q |
334 |
cttgagtccatccatgtcaggcatgtgaacttcagcgattaccaggtcaaacatgtctatgttttctcgcaacatagtcaatgcagttattgcttcacta |
433 |
Q |
| |
|
||| ||||||||||||||||||| ||| || ||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||| |||||| |||| |
|
|
| T |
47275410 |
cttaagtccatccatgtcaggcaggtgcacatcagcgattaccaggtcaaacttgtctttgttttctcgcaacatagtcaatgccgtttttgcttgacta |
47275509 |
T |
|
| Q |
434 |
gttgtggttactgcaatccc |
453 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
47275510 |
gttgtcgttactgcaatccc |
47275529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 33 - 466
Target Start/End: Original strand, 49060903 - 49061346
Alignment:
| Q |
33 |
gactccttattccgaattacatgctgccaaatgttccttagctcctccaatctcacaggtttcagcagaaaatcacaggcaccgtgggaaattgccttca |
132 |
Q |
| |
|
|||| ||| |||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||| | |||| |
|
|
| T |
49060903 |
gacttcttcttcctaattacatgctgccaaatgttctttagctcctctaatctcacaggtttcagcagataatcacaggcaccatgggaaattcctttca |
49061002 |
T |
|
| Q |
133 |
tcaccagctccgtttcaccatgagcagacaacactgaaatcaaacaatttataacaacaa-----tcattgattaataattatataaataaatgagagtg |
227 |
Q |
| |
|
||||||||| || ||||||| ||||||||||||||||||||||| ||||||| | ||| |||||||||| || | ||| |||||| | ||| |
|
|
| T |
49061003 |
tcaccagctttgtatcaccatatgcagacaacactgaaatcaaacattttataaaaccaaaagtatcattgattagtagtcgtatcaataaacaatagtc |
49061102 |
T |
|
| Q |
228 |
aaaatgaagaaacagaacaa--------agatgaagagctgaaaattataaaacagatcctcccaacttacttatgacaggaagatccatttcaagtcct |
319 |
Q |
| |
|
|||||||| ||| |||| || | || || ||| || |||| | |||||||| | ||||||||||||| ||||| |||||||||||||| |
|
|
| T |
49061103 |
aaaatgaataaatagaaaaagaagaaaaaaattaacagccaaagattacatgacagatcccc---acttacttatgacgggaaggtccatttcaagtccc |
49061199 |
T |
|
| Q |
320 |
acaagttccagcagcttgagtccatccatgtcaggcatgtgaacttcagcgattaccaggtcaaacatgtctatgttttctcgcaacatagtcaatgcag |
419 |
Q |
| |
|
|||||||| |||||||| | |||||||||||| |||||||| || ||| |||||||||||||||| ||||| ||||||||| |||||| ||||| || | |
|
|
| T |
49061200 |
acaagttcaagcagcttaaatccatccatgtccggcatgtgtacatcactgattaccaggtcaaacttgtctttgttttctctcaacatggtcaacgccg |
49061299 |
T |
|
| Q |
420 |
ttattgcttcactagttgtggttactgcaatcccaagtcaaaaataa |
466 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
49061300 |
ttattgcttgactagttgtggttactgcaatccccagtcagaaataa |
49061346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 461 - 625
Target Start/End: Original strand, 38099213 - 38099392
Alignment:
| Q |
461 |
aaataaataagatagatattattcagaacga----gcaaa-tacactttgcatgtatatcca-------ggactagaacaga--gcaattgtgatatact |
546 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||| |||| || ||||| |||||||||| ||||| |
|
|
| T |
38099213 |
aaataaataagatagttattattcagaacgatcgagcaaagtacactttgcatgtatatccattatccaggaccagcacagaaagcaattgtgaaatact |
38099312 |
T |
|
| Q |
547 |
tgaaaaacaaaa-attctaaccatgtggaaatagagagattctgaaatccaagcaataacaggtacaaagtataataaaa |
625 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
38099313 |
tgaaaaacaaaaaattctaaccatgtacaaatagagagattctgaaatccaagcaataacatgtacaaagtataataaaa |
38099392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 687 - 820
Target Start/End: Original strand, 38099474 - 38099607
Alignment:
| Q |
687 |
tggtattgacatgatcggaggagagtttccaaaagcaagagagaagtaggatcatcgtcaacggcaagaacacgcattccgatgggaaactgatcactgg |
786 |
Q |
| |
|
||||||||||||| ||||||| ||||||| ||| | ||||| || | | |||| |||| ||| |||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
38099474 |
tggtattgacatgttcggaggcgagtttctaaatccgagagataattggaatcaccgtctacgacaagaacatgcattccgatgggaaaccgatcactgg |
38099573 |
T |
|
| Q |
787 |
aatcatccattattctctcttctctactatgcac |
820 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
38099574 |
aatcatccattattctctcttctctactacgcac |
38099607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 682 - 806
Target Start/End: Original strand, 49062346 - 49062470
Alignment:
| Q |
682 |
gaccgtggtattgacatgatcggaggagagtttccaaaagcaagagagaagtaggatcatcgtcaacggcaagaacacgcattccgatgggaaactgatc |
781 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||| ||||||| |||| ||||| ||||||||||| ||||||||||||||||| ||||| | || |
|
|
| T |
49062346 |
gaccgtggtattgacatcttcggagaagagtttccaaaaccaagagacaagttggatcgtcgtcaacggcgagaacacgcattccgataggaaaacggtc |
49062445 |
T |
|
| Q |
782 |
actggaatcatccattattctctct |
806 |
Q |
| |
|
|| ||||||| ||||| |||||||| |
|
|
| T |
49062446 |
accggaatcaaccatttttctctct |
49062470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 672 - 815
Target Start/End: Original strand, 47276046 - 47276189
Alignment:
| Q |
672 |
aaaagaagcagaccgtggtattgacatgatcggaggagagtttccaaaagcaagagagaagtaggatcatcgtcaacggcaagaacacgcattccgatgg |
771 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| ||| | ||||| ||| | ||| |||| ||||| ||||||||||||||||| | |
|
|
| T |
47276046 |
aaaagaagcagaccgtggtattgacatgatcggagacgagtttctaaatccgagagatgagtggaatcgccgtcgacggcgagaacacgcattccgattg |
47276145 |
T |
|
| Q |
772 |
gaaactgatcactggaatcatccattattctctcttctctacta |
815 |
Q |
| |
|
||||| | |||||||| || ||||| |||||||||||||||||| |
|
|
| T |
47276146 |
gaaaccggtcactggagtcgtccataattctctcttctctacta |
47276189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 186
Target Start/End: Complemental strand, 2893425 - 2893287
Alignment:
| Q |
48 |
attacatgctgccaaatgttccttagctcctccaatctcacaggtttcagcagaaaatcacaggcaccgtgggaaattgccttcatcaccagctccgttt |
147 |
Q |
| |
|
|||||||||||||||||| || || ||| | || ||| ||||||||||||||| ||||||| |||||||| |||| | |||||||||| || || | |
|
|
| T |
2893425 |
attacatgctgccaaatgatctgtacctctttcagtctaacaggtttcagcagataatcacaagcaccgtgttcaattcctttcatcaccatcttcggat |
2893326 |
T |
|
| Q |
148 |
caccatgagcagacaacactgaaatcaaacaatttataa |
186 |
Q |
| |
|
|| ||| ||||| ||||||||||||||||| ||||||| |
|
|
| T |
2893325 |
catcattcgcagaaaacactgaaatcaaacactttataa |
2893287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 284 - 363
Target Start/End: Complemental strand, 2888633 - 2888554
Alignment:
| Q |
284 |
aacttacttatgacaggaagatccatttcaagtcctacaagttccagcagcttgagtccatccatgtcaggcatgtgaac |
363 |
Q |
| |
|
||||||||||||||||| | |||||| |||||||| ||||| || || ||||| | |||||||||||| ||||| ||||| |
|
|
| T |
2888633 |
aacttacttatgacaggtaaatccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcatatgaac |
2888554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 363
Target Start/End: Complemental strand, 2904736 - 2904657
Alignment:
| Q |
284 |
aacttacttatgacaggaagatccatttcaagtcctacaagttccagcagcttgagtccatccatgtcaggcatgtgaac |
363 |
Q |
| |
|
|||||||| |||||||| || ||||| |||||||| ||||| || || ||||| | |||||||||||| ||||| ||||| |
|
|
| T |
2904736 |
aacttactgatgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcatatgaac |
2904657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 288 - 359
Target Start/End: Complemental strand, 34316118 - 34316047
Alignment:
| Q |
288 |
tacttatgacaggaagatccatttcaagtcctacaagttccagcagcttgagtccatccatgtcaggcatgt |
359 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| ||| |||| || || |||| ||||||||||||||||||| |
|
|
| T |
34316118 |
tactaatgacaggaagatccatctcaagtccaacatgttcaagaagtttgaaaccatccatgtcaggcatgt |
34316047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 284 - 407
Target Start/End: Original strand, 48870446 - 48870569
Alignment:
| Q |
284 |
aacttacttatgacaggaagatccatttcaagtcctacaagttccagcagcttgagtccatccatgtcaggcatgtgaacttcagcgattaccaggtcaa |
383 |
Q |
| |
|
||||||| ||||||||| || ||||| |||||||| ||||| || || ||||| | |||||||||||| ||||| ||||| | | |||||| ||||||| |
|
|
| T |
48870446 |
aacttacctatgacaggtaggtccatctcaagtccaacaagctcaagaagcttaaatccatccatgtctggcatatgaacattactgattactaggtcaa |
48870545 |
T |
|
| Q |
384 |
acatgtctatgttttctcgcaaca |
407 |
Q |
| |
|
| ||| | ||||||||| ||||| |
|
|
| T |
48870546 |
aattgtttttgttttctctcaaca |
48870569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 737 - 782
Target Start/End: Original strand, 48871585 - 48871630
Alignment:
| Q |
737 |
atcatcgtcaacggcaagaacacgcattccgatgggaaactgatca |
782 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| ||||||| |||| |
|
|
| T |
48871585 |
atcatcatcaacagcaagaacacgcattccgataggaaacttatca |
48871630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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