View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18683_low_11 (Length: 478)
Name: NF18683_low_11
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18683_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Complemental strand, 31469649 - 31469187
Alignment:
| Q |
1 |
acttttgctactactatataatttaaacatactttggtttggcacaaacacatttgcttatgcatcaggaaatgatacagaatttttggcattgctcaaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31469649 |
acttttgctactactatataatttaaacatactttggtttggcacaaacacatttgcttatgcatcaggaaatgatacagattttttggcattgctcaaa |
31469550 |
T |
|
| Q |
101 |
ttcaaggaatcaatatccaaagactcaaatagaatcttagactcttggaatagctctacacaattttgtaagtggcatggaatcccatgcatgaatcaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
31469549 |
ttcaaggaatcaatatccaaagactcaaatagaatcttagactcttggaatagctctacacaattttgcaagtggcatggaatcacatgcatgaatcaaa |
31469450 |
T |
|
| Q |
201 |
gagttacagaatttaaactagaaggatataagttgcatggatctatatcaccttatgttggtaatctctcttttttgacaaacttgaatctcatgaacaa |
300 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31469449 |
gagttacagaattgaaactagaaggatataagttgcatggatctatatcaccttatgttggtaatctctcttttttgacaaacttgaatctcatgaacaa |
31469350 |
T |
|
| Q |
301 |
cagcttctatggaacaatcccacaagaattgtgtagtttagtacaattacaaaaactttacctcacaaataactcattggttggggaaattcctacaaac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31469349 |
cagcttctatggaacaatcccacaagaattgtgtagtttagtacaattacaaaaactttacctcacaaataactcattggttggggaaattcctacaaac |
31469250 |
T |
|
| Q |
401 |
ttgtcaagtttgttgaatcttaaagacttattcttgcaagggaacaatcttgttggcagaata |
463 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31469249 |
ttgtcaagtttgttgaatcttaaagacttattcttgcaagggaacaatcttgttggcagaata |
31469187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 85 - 400
Target Start/End: Original strand, 10609507 - 10609828
Alignment:
| Q |
85 |
tttggcattgctcaaattcaaggaatcaatatccaaagactcaaatagaatcttagactcttggaatagctctacacaattttgtaagtggcatggaatc |
184 |
Q |
| |
|
|||| ||||||| |||||||| |||||||||||||| || ||||| || ||||||| ||||||||| || | || || |||||||||| |||| || |
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|
| T |
10609507 |
tttgtcattgcttaaattcaaagaatcaatatccaatgatccaaatggagtcttagattcttggaatttttccatccatttatgtaagtggcgtggagtc |
10609606 |
T |
|
| Q |
185 |
ccatgca------tgaatcaaagagttacagaatttaaactagaaggatataagttgcatggatctatatcaccttatgttggtaatctctcttttttga |
278 |
Q |
| |
|
|||||| || | |||||||||| ||| || || || ||||||||| ||||||||||||| |||||||| ||||| || ||||| ||||| | | |
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| T |
10609607 |
acatgcagctctatgcaacaaagagttatagagttgaaccttgaaggatatcagttgcatggatccatatcaccatatgtaggcaatcttacttttctta |
10609706 |
T |
|
| Q |
279 |
caaacttgaatctcatgaacaacagcttctatggaacaatcccacaagaattgtgtagtttagtacaattacaaaaactttacctcacaaataactcatt |
378 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| || || ||| || || ||||||| ||| ||||||| |||| |||||||| || |
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| T |
10609707 |
caaccttgaatctcatgaacaacagcttctatggaacaatcccgcaggagttgggtcagttgctacaattgcaacaactttatctcatcaataactcttt |
10609806 |
T |
|
| Q |
379 |
ggttggggaaattcctacaaac |
400 |
Q |
| |
|
| || ||||||||||||||| |
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|
| T |
10609807 |
tgcaggagaaattcctacaaac |
10609828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 190 - 327
Target Start/End: Complemental strand, 11050173 - 11050036
Alignment:
| Q |
190 |
catgaatcaaagagttacagaatttaaactagaaggatataagttgcatggatctatatcaccttatgttggtaatctctcttttttgacaaacttgaat |
289 |
Q |
| |
|
|||| |||||||||||||| | || || |||||||||||| ||||||||||||| |||||||| |||||||| |||||| ||||||||||| | || ||| |
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|
| T |
11050173 |
catgcatcaaagagttacaaagttgaacctagaaggatatcagttgcatggatcaatatcaccctatgttggcaatctcacttttttgacagaattcaat |
11050074 |
T |
|
| Q |
290 |
ctcatgaacaacagcttctatggaacaatcccacaaga |
327 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||| |
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|
| T |
11050073 |
ctcatgaacaacagcttctatggagaaattccacaaga |
11050036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 90 - 274
Target Start/End: Complemental strand, 19608272 - 19608082
Alignment:
| Q |
90 |
cattgctcaaattcaaggaatcaatatccaaagactcaaatagaatcttagactcttggaatagctctacacaattttgtaagtggcatggaatcccatg |
189 |
Q |
| |
|
|||||||| ||||||| || |||||||| | ||| ||||| || ||||||| ||||||||||| || ||||| ||||| || |||||||||||| |||| |
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|
| T |
19608272 |
cattgctccaattcaaagattcaatatcaattgacccaaatggagtcttagattcttggaatagttcaacacacttttgcaattggcatggaatcacatg |
19608173 |
T |
|
| Q |
190 |
------catgaatcaaagagttacagaatttaaactagaaggatataagttgcatggatctatatcaccttatgttggtaatctctctttt |
274 |
Q |
| |
|
|||| |||||||||||| |||||| || ||| |||||||| | ||||||||||| ||||| || || ||||||||||||||||| |
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|
| T |
19608172 |
cagccccatgcatcaaagagttatagaattgaacctacaaggatatgaattgcatggatcaatatctactcatattggtaatctctctttt |
19608082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 89 - 271
Target Start/End: Complemental strand, 9838736 - 9838548
Alignment:
| Q |
89 |
gcattgctcaaattcaaggaatcaatatccaaagactcaaatagaatcttagactcttggaatagctctacacaattttgtaagtggcatggaatcccat |
188 |
Q |
| |
|
||||||||| ||||||| ||||||||||||| ||| ||||| || ||||||| ||||||||| |||| || || || || |||||||||||| ||| |
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|
| T |
9838736 |
gcattgctccaattcaaagaatcaatatccagtgacccaaatggagtcttagattcttggaattcttctatccacttctgcaactggcatggaatcacat |
9838637 |
T |
|
| Q |
189 |
gca------tgaatcaaagagttacagaatttaaactagaaggatataagttgcatggatctatatcaccttatgttggtaatctctct |
271 |
Q |
| |
|
||| || |||||||||||||| |||| || || ||||||| |||||||||||||| || |||||||| |||| ||||||||| |
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|
| T |
9838636 |
gcaaccccatgcatcaaagagttacaaaattgaacttacaaggatacaagttgcatggatccatgtcaccttacattggcaatctctct |
9838548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 198 - 313
Target Start/End: Complemental strand, 10719191 - 10719076
Alignment:
| Q |
198 |
aaagagttacagaatttaaactagaaggatataagttgcatggatctatatcaccttatgttggtaatctctcttttttgacaaacttgaatctcatgaa |
297 |
Q |
| |
|
||||||||||||| || || |||| ||||||| ||| ||||||||| |||| || ||||||| |||||||| ||||||| |||| | ||||| || || |
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|
| T |
10719191 |
aaagagttacagagttgaacctaggaggatatctgttacatggatctttatctccccatgttggcaatctctcctttttgataaacctcaatcttataaa |
10719092 |
T |
|
| Q |
298 |
caacagcttctatgga |
313 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
10719091 |
caacagcttctttgga |
10719076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 283
Target Start/End: Original strand, 7190800 - 7191003
Alignment:
| Q |
86 |
ttggcattgctcaaattcaaggaatcaatatccaaagactcaaatagaatcttagactcttggaatagctctacacaattttgtaagtggcatggaatcc |
185 |
Q |
| |
|
||||| |||||||| ||||| ||||||||||| || || || || ||||||| | |||||||||||| || || || || || |||||| |||||||| |
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|
| T |
7190800 |
ttggcgttgctcaagttcaaagaatcaatatctaatgatccatatggaatcttggcctcttggaatagttcaactcacttctgcaagtggtatggaatca |
7190899 |
T |
|
| Q |
186 |
catg------catgaatcaaagagttacagaatttaaactagaaggatataagttgcatggatctatatcaccttatgttggtaatctctcttttttgac |
279 |
Q |
| |
|
|||| |||| ||||||||||| | || || || | ||||||||| || ||||||||| ||||| || ||||||| |||||||||||||||| |
|
|
| T |
7190900 |
catgcagtcccatgcatcaaagagttgccgagttaaacttggaaggatatcagctgcatggattgatatctccccatgttggcaatctctcttttttgag |
7190999 |
T |
|
| Q |
280 |
aaac |
283 |
Q |
| |
|
|||| |
|
|
| T |
7191000 |
aaac |
7191003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 181
Target Start/End: Original strand, 10592746 - 10592840
Alignment:
| Q |
87 |
tggcattgctcaaattcaaggaatcaatatccaaagactcaaatagaatcttagactcttggaatagctctacacaattttgtaagtggcatgga |
181 |
Q |
| |
|
|||||||||||||||||||||| || ||||||| ||| || |||||||| | || ||||||||| ||||||||||| || || ||||||||| |
|
|
| T |
10592746 |
tggcattgctcaaattcaaggagtctatatccagcgacccatatagaatcctcgattcttggaatgcttctacacaattctgcaactggcatgga |
10592840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 164 - 274
Target Start/End: Complemental strand, 10765448 - 10765332
Alignment:
| Q |
164 |
ttttgtaagtggcatggaatcccatgca------tgaatcaaagagttacagaatttaaactagaaggatataagttgcatggatctatatcaccttatg |
257 |
Q |
| |
|
||||| ||||||||||||||| |||||| || ||||||| |||||||| || || |||| ||||||| |||| ||||||||| |||| || ||| |
|
|
| T |
10765448 |
ttttgaaagtggcatggaatcacatgcagcctcatgcatcaaagggttacagagttgaacctagcaggatatcagttacatggatctttatctccctatc |
10765349 |
T |
|
| Q |
258 |
ttggtaatctctctttt |
274 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
10765348 |
ttggtaatctcactttt |
10765332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 268
Target Start/End: Original strand, 10593672 - 10593745
Alignment:
| Q |
195 |
atcaaagagttacagaatttaaactagaaggatataagttgcatggatctatatcaccttatgttggtaatctc |
268 |
Q |
| |
|
|||||||||||||| |||| | || ||||||| ||||||||||||| |||||| |||||| |||| |||||| |
|
|
| T |
10593672 |
atcaaagagttacaaaattaatgttacaaggatacaagttgcatggatatatatctccttatattggcaatctc |
10593745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 85 - 117
Target Start/End: Complemental strand, 10743114 - 10743082
Alignment:
| Q |
85 |
tttggcattgctcaaattcaaggaatcaatatc |
117 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
|
|
| T |
10743114 |
tttggcattgctcaaattcaaagaatcaatatc |
10743082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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