View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18683_low_2 (Length: 689)

Name: NF18683_low_2
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18683_low_2
NF18683_low_2
[»] chr5 (4 HSPs)
chr5 (18-679)||(656245-656906)
chr5 (572-631)||(12842972-12843031)
chr5 (577-631)||(37022666-37022720)
chr5 (580-631)||(24092098-24092149)
[»] chr4 (5 HSPs)
chr4 (485-567)||(3896085-3896167)
chr4 (485-565)||(3144996-3145076)
chr4 (577-631)||(14027054-14027108)
chr4 (577-631)||(6746689-6746743)
chr4 (577-624)||(8724775-8724822)
[»] scaffold0015 (2 HSPs)
scaffold0015 (576-631)||(29526-29581)
scaffold0015 (577-631)||(24211-24265)
[»] chr8 (4 HSPs)
chr8 (576-631)||(86508-86563)
chr8 (576-631)||(91825-91880)
chr8 (576-631)||(19802979-19803034)
chr8 (577-631)||(29010782-29010836)
[»] chr7 (4 HSPs)
chr7 (576-631)||(11716628-11716683)
chr7 (577-631)||(13167037-13167091)
chr7 (578-631)||(11711383-11711436)
chr7 (576-631)||(13160581-13160636)
[»] chr6 (5 HSPs)
chr6 (576-631)||(16777801-16777856)
chr6 (576-631)||(32703873-32703928)
chr6 (577-631)||(16772466-16772520)
chr6 (577-631)||(32708250-32708304)
chr6 (577-629)||(26243701-26243753)
[»] chr3 (11 HSPs)
chr3 (576-631)||(4100097-4100152)
chr3 (576-631)||(5383349-5383404)
chr3 (576-631)||(6806583-6806638)
chr3 (577-631)||(5378014-5378068)
chr3 (577-631)||(13719155-13719209)
chr3 (576-631)||(13723051-13723106)
chr3 (576-631)||(4099737-4099792)
chr3 (640-679)||(5378234-5378273)
chr3 (577-631)||(2185446-2185500)
chr3 (579-628)||(23619432-23619481)
chr3 (640-679)||(5383570-5383609)
[»] chr1 (16 HSPs)
chr1 (576-631)||(2797004-2797059)
chr1 (576-631)||(14471543-14471598)
chr1 (576-631)||(14476906-14476961)
chr1 (576-631)||(23200390-23200445)
chr1 (577-631)||(2790575-2790629)
chr1 (577-631)||(23202759-23202813)
chr1 (577-631)||(39170182-39170236)
chr1 (580-631)||(42375365-42375416)
chr1 (576-631)||(21010395-21010450)
chr1 (640-679)||(14471763-14471802)
chr1 (640-679)||(14477126-14477165)
chr1 (640-679)||(39169978-39170017)
chr1 (577-630)||(394763-394816)
chr1 (184-246)||(22381250-22381312)
chr1 (579-630)||(14632655-14632706)
chr1 (577-612)||(42377395-42377430)
[»] chr2 (2 HSPs)
chr2 (577-631)||(20925392-20925446)
chr2 (488-562)||(44046416-44046490)


Alignment Details
Target: chr5 (Bit Score: 583; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 18 - 679
Target Start/End: Original strand, 656245 - 656906
Alignment:
Q  18 tcaagtagggccagtaatgaaagtttttctggtagctttggtttcctattcatttccatttattgtcatcccaaatgcctgattggtcggttctatcgtc 117  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  656245 tcaagtagggccagtgatgaaagtttttctggtagctttggtttcctattcatttccatttattgtcatcccaaatgcctgattggtcggttctatcgtc 656344  T
Q  118 gcctaaacttccttccgctttg-tcgctgtttctttgcccataaaattgttttgcacagcactcaataggtatgttgtcgacattgtatcatttttagtt 216  Q
    |||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  656345 gcctaaacttccttccgctttgatcgctctttctttgcccataaa-ttgttttgcacagcactcaataggtatgttatcgacatcgtatcatttttagtt 656443  T
Q  217 ttctgccaacactgagactcaccattttttggtttctttcaatgttgggactccacgactgaatataatgtaattgtataaagccttcatgttagtaagt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||    
T  656444 ttctgccaacactgagactcaccattttttggtttctttcaatgttgggactccacggctgaatatggtgtaattgtataaagccttcatgttagtaagt 656543  T
Q  317 agttagttttcctatcatattttctcaagtgtccacacaacccatttctgtagtataaatggagtgtgtgaaagaaaatccatgaatgcaataattgaac 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  656544 agttagttttcctatcatattttctcaagtgtccacacaacccatttctgtagtataaatggagtgtgtgaaagaaaatccatgaatgcaataattgaac 656643  T
Q  417 tcaaacttagtatatgctcaaatgagctgaaacttgaaattttctacaactctttcattgattgcaaagtattaccagggttctattggatggagatcca 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  656644 tcaaacttagtatatgctcaaatgagctgaaacttgaaattttctacaactctttcattgattgcaaagtattaccagggttctgttggatggagatcca 656743  T
Q  517 cataatttactctttctgatctttgagcaagctttcgctgatcaaattacatacacaccatggctcagaaaccaagagagaattcactctctaactctca 616  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  656744 cagaatttactctttctgatctttgagcaagctttcgctgatcaaattacatacacaccatggctcagaaaccaagagagaatccactctctaactctca 656843  T
Q  617 aatgagaaactcaagnnnnnnnncaatgaggtaagggatgatgtaagtgaccttgagcctatg 679  Q
    |||||||||||||||        ||||||||||||||||||||||||||||||||||||||||    
T  656844 aatgagaaactcaagttttttttcaatgaggtaagggatgatgtaagtgaccttgagcctatg 656906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 572 - 631
Target Start/End: Complemental strand, 12843031 - 12842972
Alignment:
Q  572 caccatggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 631  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12843031 caccttggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 12842972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 577 - 631
Target Start/End: Original strand, 37022666 - 37022720
Alignment:
Q  577 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 631  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37022666 tggctaagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 37022720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 580 - 631
Target Start/End: Original strand, 24092098 - 24092149
Alignment:
Q  580 ctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 631  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  24092098 ctcagaaactaagagagaatccactctctaactctcaaatgagaaactcaag 24092149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 485 - 567
Target Start/End: Complemental strand, 3896167 - 3896085
Alignment:
Q  485 gtattaccagggttctattggatggagatccacataatttactctttctgatctttgagcaagctttcgctgatcaaattaca 567  Q
    ||||||||| |||||| ||||||| ||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||    
T  3896167 gtattaccatggttctgttggatgtagatccacagactttactctttctgatctttgcgcaagctttcgctgatcaaattaca 3896085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 485 - 565
Target Start/End: Original strand, 3144996 - 3145076
Alignment:
Q  485 gtattaccagggttctattggatggagatccacataatttactctttctgatctttgagcaagctttcgctgatcaaatta 565  Q
    ||||||||| |||||| ||||||| ||||||||| | || ||||||||||||||||| |||||||||||||||||||||||    
T  3144996 gtattaccatggttctgttggatgtagatccacagacttcactctttctgatctttgcgcaagctttcgctgatcaaatta 3145076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 577 - 631
Target Start/End: Complemental strand, 14027108 - 14027054
Alignment:
Q  577 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 631  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14027108 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 14027054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 577 - 631
Target Start/End: Original strand, 6746689 - 6746743
Alignment:
Q  577 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 631  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  6746689 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaacgcaag 6746743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 577 - 624
Target Start/End: Complemental strand, 8724822 - 8724775
Alignment:
Q  577 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaa 624  Q
    ||||||| || |||||||||||| |||| |||||||||||||||||||    
T  8724822 tggctcaaaagccaagagagaatccactatctaactctcaaatgagaa 8724775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 576 - 631
Target Start/End: Original strand, 29526 - 29581
Alignment:
Q  576 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 631  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29526 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 29581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 577 - 631
Target Start/End: Original strand, 24211 - 24265
Alignment:
Q  577 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 631  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24211 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 24265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 576 - 631
Target Start/End: Complemental strand, 86563 - 86508
Alignment:
Q  576 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 631  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  86563 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 86508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 576 - 631
Target Start/End: Complemental strand, 91880 - 91825
Alignment:
Q  576 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 631  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  91880 atggctcataaaccaagagagaatccactctctaactctcaaatgagaaactcaag 91825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 576 - 631
Target Start/End: Complemental strand, 19803034 - 19802979
Alignment:
Q  576 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 631  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  19803034 atggctcagaaaccaagagagaatccactctctaactctcaaattagaaactcaag 19802979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 577 - 631
Target Start/End: Original strand, 29010782 - 29010836
Alignment:
Q  577 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 631  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  29010782 tggctcagaaatcaagagagaatccactctctaactctcaaatgagaaactcaag 29010836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 576 - 631
Target Start/End: Complemental strand, 11716683 - 11716628
Alignment:
Q  576 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 631  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11716683 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 11716628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 577 - 631
Target Start/End: Complemental strand, 13167091 - 13167037
Alignment:
Q  577 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 631  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13167091 tggctcagaaatcaagagagaattcactctctaactctcaaatgagaaactcaag 13167037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 578 - 631
Target Start/End: Complemental strand, 11711436 - 11711383
Alignment:
Q  578 ggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 631  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11711436 ggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 11711383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 576 - 631
Target Start/End: Complemental strand, 13160636 - 13160581
Alignment:
Q  576 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 631  Q
    ||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||    
T  13160636 atggctcagaaacgaagagagaatccactctctaactctcatatgagaaactcaag 13160581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 576 - 631
Target Start/End: Original strand, 16777801 - 16777856
Alignment:
Q  576 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 631  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  16777801 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 16777856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 576 - 631
Target Start/End: Complemental strand, 32703928 - 32703873
Alignment:
Q  576 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 631  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  32703928 atggctcagaaaccaagagagaatccactctataactctcaaatgagaaactcaag 32703873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 577 - 631
Target Start/End: Original strand, 16772466 - 16772520
Alignment:
Q  577 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 631  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  16772466 tggctcagaaaccaatagagaatccactctctaactctcaaatgagaaactcaag 16772520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 577 - 631
Target Start/End: Complemental strand, 32708304 - 32708250
Alignment:
Q  577 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 631  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  32708304 tggctcagaaactaagagagaatccactctctaactctcaaatgagaaactcaag 32708250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 577 - 629
Target Start/End: Complemental strand, 26243753 - 26243701
Alignment:
Q  577 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactca 629  Q
    |||||||||||| ||||||||  ||| | ||||||||| ||||||||||||||    
T  26243753 tggctcagaaactaagagagacctcattttctaactcttaaatgagaaactca 26243701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 576 - 631
Target Start/End: Complemental strand, 4100152 - 4100097
Alignment:
Q  576 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 631  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4100152 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 4100097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 576 - 631
Target Start/End: Original strand, 5383349 - 5383404
Alignment:
Q  576 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 631  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5383349 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 5383404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 576 - 631
Target Start/End: Original strand, 6806583 - 6806638
Alignment:
Q  576 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 631  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6806583 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 6806638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 577 - 631
Target Start/End: Original strand, 5378014 - 5378068
Alignment:
Q  577 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 631  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5378014 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 5378068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 577 - 631
Target Start/End: Original strand, 13719155 - 13719209
Alignment:
Q  577 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 631  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13719155 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 13719209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 576 - 631
Target Start/End: Original strand, 13723051 - 13723106
Alignment:
Q  576 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 631  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  13723051 atggctcagaaaccaagagagaatccactctctaactatcaaatgagaaactcaag 13723106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 576 - 631
Target Start/End: Original strand, 4099737 - 4099792
Alignment:
Q  576 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 631  Q
    |||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||    
T  4099737 atggctcataaaccaagagagaatccactctctaactctcaaaagagaaactcaag 4099792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 640 - 679
Target Start/End: Original strand, 5378234 - 5378273
Alignment:
Q  640 caatgaggtaagggatgatgtaagtgaccttgagcctatg 679  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  5378234 caatgaggtaagggatgatgtaagtgaccttgagcctatg 5378273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 577 - 631
Target Start/End: Complemental strand, 2185500 - 2185446
Alignment:
Q  577 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 631  Q
    ||||||||||| ||||||||||| || ||||||||| ||||||||||||||||||    
T  2185500 tggctcagaaatcaagagagaatccattctctaactttcaaatgagaaactcaag 2185446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 579 - 628
Target Start/End: Complemental strand, 23619481 - 23619432
Alignment:
Q  579 gctcagaaaccaagagagaattcactctctaactctcaaatgagaaactc 628  Q
    ||||||||||||||||||||| |||||| | |||||||||||||||||||    
T  23619481 gctcagaaaccaagagagaatccactctattactctcaaatgagaaactc 23619432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 640 - 679
Target Start/End: Original strand, 5383570 - 5383609
Alignment:
Q  640 caatgaggtaagggatgatgtaagtgaccttgagcctatg 679  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  5383570 caatgaggtaagggatgatgtaagtgaccttgagcttatg 5383609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 576 - 631
Target Start/End: Original strand, 2797004 - 2797059
Alignment:
Q  576 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 631  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2797004 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 2797059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 576 - 631
Target Start/End: Original strand, 14471543 - 14471598
Alignment:
Q  576 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 631  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14471543 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 14471598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 576 - 631
Target Start/End: Original strand, 14476906 - 14476961
Alignment:
Q  576 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 631  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14476906 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 14476961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 576 - 631
Target Start/End: Complemental strand, 23200445 - 23200390
Alignment:
Q  576 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 631  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23200445 atggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 23200390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 577 - 631
Target Start/End: Original strand, 2790575 - 2790629
Alignment:
Q  577 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 631  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2790575 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 2790629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 577 - 631
Target Start/End: Complemental strand, 23202813 - 23202759
Alignment:
Q  577 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 631  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23202813 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 23202759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 577 - 631
Target Start/End: Complemental strand, 39170236 - 39170182
Alignment:
Q  577 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 631  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  39170236 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 39170182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 580 - 631
Target Start/End: Complemental strand, 42375416 - 42375365
Alignment:
Q  580 ctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 631  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  42375416 ctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 42375365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 576 - 631
Target Start/End: Original strand, 21010395 - 21010450
Alignment:
Q  576 atggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 631  Q
    ||||||||||||||||||||| || |||||||||||||| ||||||||||||||||    
T  21010395 atggctcagaaaccaagagagtatccactctctaactctgaaatgagaaactcaag 21010450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 640 - 679
Target Start/End: Original strand, 14471763 - 14471802
Alignment:
Q  640 caatgaggtaagggatgatgtaagtgaccttgagcctatg 679  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  14471763 caatgaggtaagggatgatgtaagtgaccttgagcctatg 14471802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 640 - 679
Target Start/End: Original strand, 14477126 - 14477165
Alignment:
Q  640 caatgaggtaagggatgatgtaagtgaccttgagcctatg 679  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  14477126 caatgaggtaagggatgatgtaagtgaccttgagcctatg 14477165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 640 - 679
Target Start/End: Complemental strand, 39170017 - 39169978
Alignment:
Q  640 caatgaggtaagggatgatgtaagtgaccttgagcctatg 679  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  39170017 caatgaggtaagggatgatgtaagtgaccttgagcctatg 39169978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 577 - 630
Target Start/End: Original strand, 394763 - 394816
Alignment:
Q  577 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaa 630  Q
    ||||||||||| |||||||||||||||||| ||| | |||||||||||||||||    
T  394763 tggctcagaaatcaagagagaattcactctgtaattttcaaatgagaaactcaa 394816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 246
Target Start/End: Original strand, 22381250 - 22381312
Alignment:
Q  184 aggtatgttgtcgacattgtatcatttttagttttctgccaacactgagactcaccatttttt 246  Q
    |||||||||| ||| || ||||| |||||||||||||||||||||| | ||| ||||||||||    
T  22381250 aggtatgttgccgatatcgtatcgtttttagttttctgccaacactaatacttaccatttttt 22381312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 579 - 630
Target Start/End: Original strand, 14632655 - 14632706
Alignment:
Q  579 gctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaa 630  Q
    ||||| |||| |||||||||| |||||| ||||| |||||||||||||||||    
T  14632655 gctcataaacgaagagagaatccactctttaactttcaaatgagaaactcaa 14632706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 577 - 612
Target Start/End: Complemental strand, 42377430 - 42377395
Alignment:
Q  577 tggctcagaaaccaagagagaattcactctctaact 612  Q
    ||||||||||||||||||||||| ||||||||||||    
T  42377430 tggctcagaaaccaagagagaatccactctctaact 42377395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 577 - 631
Target Start/End: Original strand, 20925392 - 20925446
Alignment:
Q  577 tggctcagaaaccaagagagaattcactctctaactctcaaatgagaaactcaag 631  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  20925392 tggctcagaaaccaagagagaatccactctctaactctcaaatgagaaactcaag 20925446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 488 - 562
Target Start/End: Complemental strand, 44046490 - 44046416
Alignment:
Q  488 ttaccagggttctattggatggagatccacataatttactctttctgatctttgagcaagctttcgctgatcaaa 562  Q
    |||||| |||||  ||||||| ||||||||| | || |||||||||||||| || |||||||| |||||||||||    
T  44046490 ttaccatggttcagttggatgtagatccacacatttcactctttctgatctctgcgcaagcttacgctgatcaaa 44046416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University