View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18683_low_20 (Length: 408)

Name: NF18683_low_20
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18683_low_20
NF18683_low_20
[»] chr5 (13 HSPs)
chr5 (180-378)||(1162254-1162452)
chr5 (171-310)||(3300186-3300323)
chr5 (171-310)||(3393079-3393216)
chr5 (178-366)||(39880615-39880795)
chr5 (178-366)||(40412704-40412884)
chr5 (315-406)||(1850749-1850840)
chr5 (178-326)||(40419663-40419810)
chr5 (18-78)||(879043-879103)
chr5 (99-179)||(39727093-39727170)
chr5 (95-179)||(38988789-38988872)
chr5 (378-408)||(16028621-16028651)
chr5 (378-408)||(35710419-35710449)
chr5 (380-408)||(32703530-32703558)
[»] chr3 (5 HSPs)
chr3 (376-408)||(15797350-15797382)
chr3 (378-408)||(6242282-6242312)
chr3 (379-408)||(1217218-1217247)
chr3 (375-408)||(30452925-30452958)
chr3 (376-408)||(40272807-40272839)
[»] chr2 (2 HSPs)
chr2 (38-73)||(12686046-12686081)
chr2 (380-408)||(21779260-21779288)
[»] chr1 (3 HSPs)
chr1 (377-408)||(38478278-38478309)
chr1 (380-408)||(19414568-19414596)
chr1 (380-408)||(34725097-34725125)
[»] chr8 (2 HSPs)
chr8 (378-408)||(26102625-26102655)
chr8 (378-408)||(30454094-30454124)
[»] chr7 (4 HSPs)
chr7 (378-408)||(32758367-32758397)
chr7 (378-408)||(42391097-42391127)
chr7 (380-408)||(21172008-21172036)
chr7 (380-408)||(31591108-31591136)
[»] chr6 (5 HSPs)
chr6 (378-408)||(1347070-1347100)
chr6 (379-408)||(25557831-25557860)
chr6 (379-408)||(25997757-25997786)
chr6 (379-408)||(26097266-26097295)
chr6 (380-408)||(1354756-1354784)
[»] chr4 (4 HSPs)
chr4 (378-408)||(11054145-11054175)
chr4 (378-408)||(38786717-38786747)
chr4 (378-408)||(47528527-47528557)
chr4 (379-408)||(48598823-48598852)
[»] scaffold0168 (1 HSPs)
scaffold0168 (379-408)||(30685-30714)
[»] scaffold0015 (1 HSPs)
scaffold0015 (380-408)||(48633-48661)


Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 180 - 378
Target Start/End: Original strand, 1162254 - 1162452
Alignment:
Q  180 ttttctgcataacagacttttagagcagtatggtgaagctgtaaatatcacacattaatacacagtttggtgccactctagtctactaattccaagtgaa 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1162254 ttttctgcataacagacttttagagcagtatggtgaagctgtaaatatcacacattaatacacagtttggtgccactttagtctactaattccaagtgaa 1162353  T
Q  280 aagaagtaaaactagccatgtttgattgcaagagttgtataaaccagccagttttgctgcaaaatctgcatccctaaggctttgagacaggattgtata 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1162354 aagaagtaaaactagccatgtttgattgcaagagttgtataaaccagccagttttgctgcaaaatctgcatccctaaggctttgagacaggattgtata 1162452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 171 - 310
Target Start/End: Complemental strand, 3300323 - 3300186
Alignment:
Q  171 ttaatgcagttttctgcataacagacttttagagcagtatggtgaagctgtaaatatcacacattaatacacagtttggtgccactctagtctactaatt 270  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  3300323 ttaatgcagttttctgcataacagacttttacagcagtatggtgaaactgtaaatatcacacattaataca--gtttggtgccactctagtctactaatt 3300226  T
Q  271 ccaagtgaaaagaagtaaaactagccatgtttgattgcaa 310  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  3300225 ccaagtgaaaagaagtaaaactagccatgtttgagtgcaa 3300186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 171 - 310
Target Start/End: Complemental strand, 3393216 - 3393079
Alignment:
Q  171 ttaatgcagttttctgcataacagacttttagagcagtatggtgaagctgtaaatatcacacattaatacacagtttggtgccactctagtctactaatt 270  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  3393216 ttaatgcagttttctgcataacagacttttacagcagtatggtgaaactgtaaatatcacacattaataca--gtttggtgccactctagtctactaatt 3393119  T
Q  271 ccaagtgaaaagaagtaaaactagccatgtttgattgcaa 310  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  3393118 ccaagtgaaaagaagtaaaactagccatgtttgagtgcaa 3393079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 178 - 366
Target Start/End: Complemental strand, 39880795 - 39880615
Alignment:
Q  178 agttttctgcataacagacttttagagcagtatggtgaagctgtaaatatcacacattaatacacagtttggtgccactctagtctactaattccaagtg 277  Q
    |||||||||||||   |||||||| || || ||||||||| || ||||||||||| |||||| |   || ||||||||||||||||||||||||||||||    
T  39880795 agttttctgcata---gacttttacagaagcatggtgaagatgcaaatatcacactttaatatagc-ttgggtgccactctagtctactaattccaagtg 39880700  T
Q  278 aaaagaagtaaaactagccatgtttgattgcaagagttgtataaaccagccagttttgctgcaaaatctgcatccctaaggctttgaga 366  Q
    || |||||  ||||||||||||||||| |||||||||||||||||    |||||||||||||||||||| |||||||||||||||||||    
T  39880699 aagagaagcgaaactagccatgtttgaatgcaagagttgtataaa----ccagttttgctgcaaaatctacatccctaaggctttgaga 39880615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 178 - 366
Target Start/End: Complemental strand, 40412884 - 40412704
Alignment:
Q  178 agttttctgcataacagacttttagagcagtatggtgaagctgtaaatatcacacattaatacacagtttggtgccactctagtctactaattccaagtg 277  Q
    |||||||||||||   |||||||| || || ||||||||| || ||||||||||| |||||| |   || ||||||||||||||||||||||||||||||    
T  40412884 agttttctgcata---gacttttacagaagcatggtgaagatgcaaatatcacactttaatatagc-ttgggtgccactctagtctactaattccaagtg 40412789  T
Q  278 aaaagaagtaaaactagccatgtttgattgcaagagttgtataaaccagccagttttgctgcaaaatctgcatccctaaggctttgaga 366  Q
    || |||||  ||||||||||||||||| |||||||||||||||||    |||||||||||||||||||| |||||||||||||||||||    
T  40412788 aagagaagcgaaactagccatgtttgaatgcaagagttgtataaa----ccagttttgctgcaaaatctacatccctaaggctttgaga 40412704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 315 - 406
Target Start/End: Complemental strand, 1850840 - 1850749
Alignment:
Q  315 tgtataaaccagccagttttgctgcaaaatctgcatccctaaggctttgagacaggattgtataaaaaagggcaacccggtgcactagagct 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || || ||||||||||| ||||    
T  1850840 tgtataaaccagccagttttgctgcaaaatctgcatccctaaggctttgagacaggattgtataaagaacggtaatccggtgcactaaagct 1850749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 178 - 326
Target Start/End: Complemental strand, 40419810 - 40419663
Alignment:
Q  178 agttttctgcataacagacttttagagcagtatggtgaagctgtaaat----atcacacattaatacacagtttggtgccactctagtctactaattcca 273  Q
    ||||| |||||||||||||||| | ||||| |||||||||||||||||    |||||| |||||||||  ||||||  ||||||||| |||||||||| |    
T  40419810 agtttcctgcataacagactttcacagcagcatggtgaagctgtaaattaatatcacagattaataca--gtttgg--ccactctag-ctactaattcta 40419716  T
Q  274 agtgaaaagaagtaaaactagccatgtttgattgcaagagttgtataaaccag 326  Q
    ||||||||||||||||||||||||| ||||| |||||||||| ||||||||||    
T  40419715 agtgaaaagaagtaaaactagccatatttgagtgcaagagttatataaaccag 40419663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 879103 - 879043
Alignment:
Q  18 aatttgggtttgtgtaacacacttagatgttgattttatgtgtataagctacaaccgatgt 78  Q
    ||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  879103 aatttgggtctttgtaacacgcttagatgttgattttatgtgtataagctacaaccgatgt 879043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 99 - 179
Target Start/End: Complemental strand, 39727170 - 39727093
Alignment:
Q  99 attaaggtcaaaaacaagcattggatatttcacaagcaagagctttgcagattccatgataaaaatcatcacttaatgcag 179  Q
    ||||||||||||||| |  ||||||| ||||| ||||||||| |||||||||||||||||  |||||||||||||||||||    
T  39727170 attaaggtcaaaaaccaatattggatttttcataagcaagag-tttgcagattccatgat--aaatcatcacttaatgcag 39727093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 179
Target Start/End: Complemental strand, 38988872 - 38988789
Alignment:
Q  95 cataattaaggtcaaaaacaagcattggatatttcacaagcaagagctttgcagattccatgataaaaatcatcacttaatgcag 179  Q
    |||||| |||||||||||| || ||||||||||||| || |||||| |||||| ||| |||  |||||||||||| ||| |||||    
T  38988872 cataatgaaggtcaaaaaccagtattggatatttcataatcaagag-tttgcatatttcatagtaaaaatcatcagttattgcag 38988789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 408
Target Start/End: Original strand, 16028621 - 16028651
Alignment:
Q  378 aaaaaagggcaacccggtgcactagagctcc 408  Q
    |||||||||||||||||||||||||||||||    
T  16028621 aaaaaagggcaacccggtgcactagagctcc 16028651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 408
Target Start/End: Complemental strand, 35710449 - 35710419
Alignment:
Q  378 aaaaaagggcaacccggtgcactagagctcc 408  Q
    |||||||||||||||||||||||||||||||    
T  35710449 aaaaaagggcaacccggtgcactagagctcc 35710419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 408
Target Start/End: Complemental strand, 32703558 - 32703530
Alignment:
Q  380 aaaagggcaacccggtgcactagagctcc 408  Q
    |||||||||||||||||||||||||||||    
T  32703558 aaaagggcaacccggtgcactagagctcc 32703530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 376 - 408
Target Start/End: Complemental strand, 15797382 - 15797350
Alignment:
Q  376 ataaaaaagggcaacccggtgcactagagctcc 408  Q
    |||||||||||||||||||||||||||||||||    
T  15797382 ataaaaaagggcaacccggtgcactagagctcc 15797350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 408
Target Start/End: Original strand, 6242282 - 6242312
Alignment:
Q  378 aaaaaagggcaacccggtgcactagagctcc 408  Q
    |||||||||||||||||||||||||||||||    
T  6242282 aaaaaagggcaacccggtgcactagagctcc 6242312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 379 - 408
Target Start/End: Complemental strand, 1217247 - 1217218
Alignment:
Q  379 aaaaagggcaacccggtgcactagagctcc 408  Q
    ||||||||||||||||||||||||||||||    
T  1217247 aaaaagggcaacccggtgcactagagctcc 1217218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 375 - 408
Target Start/End: Complemental strand, 30452958 - 30452925
Alignment:
Q  375 tataaaaaagggcaacccggtgcactagagctcc 408  Q
    |||| |||||||||||||||||||||||||||||    
T  30452958 tatataaaagggcaacccggtgcactagagctcc 30452925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 408
Target Start/End: Original strand, 40272807 - 40272839
Alignment:
Q  376 ataaaaaagggcaacccggtgcactagagctcc 408  Q
    |||||||||||||||||||||||||| ||||||    
T  40272807 ataaaaaagggcaacccggtgcactaaagctcc 40272839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 38 - 73
Target Start/End: Original strand, 12686046 - 12686081
Alignment:
Q  38 acttagatgttgattttatgtgtataagctacaacc 73  Q
    |||||||||||||||||||| |||||||||||||||    
T  12686046 acttagatgttgattttatgggtataagctacaacc 12686081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 408
Target Start/End: Original strand, 21779260 - 21779288
Alignment:
Q  380 aaaagggcaacccggtgcactagagctcc 408  Q
    |||||||||||||||||||||||||||||    
T  21779260 aaaagggcaacccggtgcactagagctcc 21779288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 377 - 408
Target Start/End: Original strand, 38478278 - 38478309
Alignment:
Q  377 taaaaaagggcaacccggtgcactagagctcc 408  Q
    ||||||||||||||||||||||||||||||||    
T  38478278 taaaaaagggcaacccggtgcactagagctcc 38478309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 408
Target Start/End: Complemental strand, 19414596 - 19414568
Alignment:
Q  380 aaaagggcaacccggtgcactagagctcc 408  Q
    |||||||||||||||||||||||||||||    
T  19414596 aaaagggcaacccggtgcactagagctcc 19414568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 408
Target Start/End: Original strand, 34725097 - 34725125
Alignment:
Q  380 aaaagggcaacccggtgcactagagctcc 408  Q
    |||||||||||||||||||||||||||||    
T  34725097 aaaagggcaacccggtgcactagagctcc 34725125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 408
Target Start/End: Complemental strand, 26102655 - 26102625
Alignment:
Q  378 aaaaaagggcaacccggtgcactagagctcc 408  Q
    |||||||||||||||||||||||||||||||    
T  26102655 aaaaaagggcaacccggtgcactagagctcc 26102625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 408
Target Start/End: Original strand, 30454094 - 30454124
Alignment:
Q  378 aaaaaagggcaacccggtgcactagagctcc 408  Q
    |||||||||||||||||||||||||||||||    
T  30454094 aaaaaagggcaacccggtgcactagagctcc 30454124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 408
Target Start/End: Complemental strand, 32758397 - 32758367
Alignment:
Q  378 aaaaaagggcaacccggtgcactagagctcc 408  Q
    |||||||||||||||||||||||||||||||    
T  32758397 aaaaaagggcaacccggtgcactagagctcc 32758367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 408
Target Start/End: Original strand, 42391097 - 42391127
Alignment:
Q  378 aaaaaagggcaacccggtgcactagagctcc 408  Q
    |||||||||||||||||||||||||||||||    
T  42391097 aaaaaagggcaacccggtgcactagagctcc 42391127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 408
Target Start/End: Original strand, 21172008 - 21172036
Alignment:
Q  380 aaaagggcaacccggtgcactagagctcc 408  Q
    |||||||||||||||||||||||||||||    
T  21172008 aaaagggcaacccggtgcactagagctcc 21172036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 408
Target Start/End: Original strand, 31591108 - 31591136
Alignment:
Q  380 aaaagggcaacccggtgcactagagctcc 408  Q
    |||||||||||||||||||||||||||||    
T  31591108 aaaagggcaacccggtgcactagagctcc 31591136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 408
Target Start/End: Complemental strand, 1347100 - 1347070
Alignment:
Q  378 aaaaaagggcaacccggtgcactagagctcc 408  Q
    |||||||||||||||||||||||||||||||    
T  1347100 aaaaaagggcaacccggtgcactagagctcc 1347070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 379 - 408
Target Start/End: Complemental strand, 25557860 - 25557831
Alignment:
Q  379 aaaaagggcaacccggtgcactagagctcc 408  Q
    ||||||||||||||||||||||||||||||    
T  25557860 aaaaagggcaacccggtgcactagagctcc 25557831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 379 - 408
Target Start/End: Complemental strand, 25997786 - 25997757
Alignment:
Q  379 aaaaagggcaacccggtgcactagagctcc 408  Q
    ||||||||||||||||||||||||||||||    
T  25997786 aaaaagggcaacccggtgcactagagctcc 25997757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 379 - 408
Target Start/End: Complemental strand, 26097295 - 26097266
Alignment:
Q  379 aaaaagggcaacccggtgcactagagctcc 408  Q
    ||||||||||||||||||||||||||||||    
T  26097295 aaaaagggcaacccggtgcactagagctcc 26097266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 408
Target Start/End: Original strand, 1354756 - 1354784
Alignment:
Q  380 aaaagggcaacccggtgcactagagctcc 408  Q
    |||||||||||||||||||||||||||||    
T  1354756 aaaagggcaacccggtgcactagagctcc 1354784  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 408
Target Start/End: Original strand, 11054145 - 11054175
Alignment:
Q  378 aaaaaagggcaacccggtgcactagagctcc 408  Q
    |||||||||||||||||||||||||||||||    
T  11054145 aaaaaagggcaacccggtgcactagagctcc 11054175  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 408
Target Start/End: Complemental strand, 38786747 - 38786717
Alignment:
Q  378 aaaaaagggcaacccggtgcactagagctcc 408  Q
    |||||||||||||||||||||||||||||||    
T  38786747 aaaaaagggcaacccggtgcactagagctcc 38786717  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 408
Target Start/End: Original strand, 47528527 - 47528557
Alignment:
Q  378 aaaaaagggcaacccggtgcactagagctcc 408  Q
    |||||||||||||||||||||||||||||||    
T  47528527 aaaaaagggcaacccggtgcactagagctcc 47528557  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 379 - 408
Target Start/End: Original strand, 48598823 - 48598852
Alignment:
Q  379 aaaaagggcaacccggtgcactagagctcc 408  Q
    ||||||||||||||||||||||||||||||    
T  48598823 aaaaagggcaacccggtgcactagagctcc 48598852  T

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Target: scaffold0168 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 379 - 408
Target Start/End: Complemental strand, 30714 - 30685
Alignment:
Q  379 aaaaagggcaacccggtgcactagagctcc 408  Q
    ||||||||||||||||||||||||||||||    
T  30714 aaaaagggcaacccggtgcactagagctcc 30685  T

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Target: scaffold0015 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 408
Target Start/End: Original strand, 48633 - 48661
Alignment:
Q  380 aaaagggcaacccggtgcactagagctcc 408  Q
    |||||||||||||||||||||||||||||    
T  48633 aaaagggcaacccggtgcactagagctcc 48661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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