View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18683_low_22 (Length: 390)
Name: NF18683_low_22
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18683_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 33632815 - 33633035
Alignment:
| Q |
17 |
gaacaaaccggttgcaattgaaatagatagttagacattccgctcacatcaattgtagtttgaattatagtctaaaattccgcaatatgttggtgatttt |
116 |
Q |
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| T |
33632815 |
gaacaaaccggttgcaattgaaatagatagttagacattccgctcacatcaattgtagtttgaattatagtctaaaattccgcaatatgttggtgatttt |
33632914 |
T |
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| Q |
117 |
ctccgtccttgcatgaggtgtgcctccaagaatctacatttttatcttttatgaagnnnnnnntgacatacttatattaaagaaagagtgagattaaaga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
33632915 |
ctccgtccttgcatgaggtgtgcctccaagaatctacatttttatcttttatgaagaaaaaaatgacatacttatattaaagaaagagtgagattaaaga |
33633014 |
T |
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| Q |
217 |
ttggatttgtagaaaatggtg |
237 |
Q |
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||||||||||||||||||||| |
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| T |
33633015 |
ttggatttgtagaaaatggtg |
33633035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 262 - 374
Target Start/End: Original strand, 33633036 - 33633148
Alignment:
| Q |
262 |
aaagcaacattttctttttcacgtaagatataaaaagcaaccttacagattaagtaatctgttaaagaatgtgatggatatcacattctttccagcactt |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33633036 |
aaagcaacattttctttttcacgtaagatataaaaagcaaccttacagattaagtaatctgttaaagaatgtgatggatatcacattcttttcagcactt |
33633135 |
T |
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| Q |
362 |
aagcagtgactta |
374 |
Q |
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| T |
33633136 |
aagcagtgactta |
33633148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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