View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18683_low_23 (Length: 387)
Name: NF18683_low_23
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18683_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 20 - 182
Target Start/End: Complemental strand, 43227845 - 43227684
Alignment:
| Q |
20 |
tctttacaagcatcaagacggacacttgtcccaccttttcttttattataatatgaatagatatatctataagacaattgtgtactaatccattttttac |
119 |
Q |
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| T |
43227845 |
tctttacaagcatgaagacggacacttgtcc-accttttcttttattataatatgaatagatatatctacaagacaattgtgtactaatccattttttac |
43227747 |
T |
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| Q |
120 |
ttaaattgacgacttaaagtcaattgttatattaaaatagatagattaaagtgcaattcatac |
182 |
Q |
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| T |
43227746 |
ttaaattgacgacttaaagtcaattgttatattaaaatagatagattaaagtgcaattcatac |
43227684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 242 - 363
Target Start/End: Complemental strand, 43227624 - 43227504
Alignment:
| Q |
242 |
atggtagcccatttagtataattaaacttctaataagcttannnnnnnncatgtataacatcccattaacaacttattataaacatgtttatttctccct |
341 |
Q |
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| T |
43227624 |
atggtagcccatttagtataattaaacttctaataagcttattttttt-catgtataacatcccattaacaacatattagaaacatgtttatttctccct |
43227526 |
T |
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| Q |
342 |
tgaattaaatctgcattttgtg |
363 |
Q |
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| T |
43227525 |
tgaattaaatctgcattttgtg |
43227504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 76 - 181
Target Start/End: Complemental strand, 43237304 - 43237199
Alignment:
| Q |
76 |
atagatatatctataagacaattgtgtactaatccattttttacttaaattgacgacttaaagtcaattgttatattaaaatagatagattaaagtgcaa |
175 |
Q |
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| T |
43237304 |
atagatatatctacaagacaactgtgtactaatcaatttttgacttaaattgacaaattaaagttaattgttatattaaaatagatagattttagtgcaa |
43237205 |
T |
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| Q |
176 |
ttcata |
181 |
Q |
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|||||| |
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| T |
43237204 |
ttcata |
43237199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 305 - 363
Target Start/End: Complemental strand, 43237082 - 43237024
Alignment:
| Q |
305 |
cattaacaacttattataaacatgtttatttctcccttgaattaaatctgcattttgtg |
363 |
Q |
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| T |
43237082 |
cattaacaccatattataaacatgtttaattttcccttgaattaaatctgcattttgtg |
43237024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 245 - 282
Target Start/End: Complemental strand, 43237135 - 43237098
Alignment:
| Q |
245 |
gtagcccatttagtataattaaacttctaataagctta |
282 |
Q |
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| T |
43237135 |
gtagcccatttaatataattaaacttctaataagctta |
43237098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 43237809 - 43237762
Alignment:
| Q |
20 |
tctttacaagcatcaagacggacacttgtcccaccttttcttttattat |
68 |
Q |
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| T |
43237809 |
tctttacaagcataaagacagacacttg-cccaccttttcttttattat |
43237762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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