View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18683_low_25 (Length: 358)

Name: NF18683_low_25
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18683_low_25
NF18683_low_25
[»] chr4 (7 HSPs)
chr4 (13-342)||(40836439-40836767)
chr4 (271-342)||(7912543-7912614)
chr4 (300-342)||(4161853-4161895)
chr4 (300-342)||(8170931-8170973)
chr4 (300-342)||(46433551-46433593)
chr4 (300-342)||(51234433-51234475)
chr4 (300-328)||(33361064-33361092)
[»] chr1 (2 HSPs)
chr1 (295-342)||(33747358-33747405)
chr1 (287-342)||(50155745-50155800)
[»] chr3 (6 HSPs)
chr3 (287-342)||(23567300-23567353)
chr3 (304-342)||(12832243-12832281)
chr3 (300-342)||(47199931-47199973)
chr3 (238-342)||(5800186-5800291)
chr3 (302-342)||(14194893-14194933)
chr3 (302-342)||(20936488-20936528)
[»] chr6 (2 HSPs)
chr6 (300-342)||(4964258-4964300)
chr6 (286-328)||(11589962-11590004)
[»] chr8 (1 HSPs)
chr8 (282-342)||(42844908-42844968)
[»] chr5 (2 HSPs)
chr5 (287-334)||(14461750-14461797)
chr5 (300-342)||(27001210-27001252)
[»] chr7 (1 HSPs)
chr7 (300-341)||(5362338-5362379)
[»] chr2 (1 HSPs)
chr2 (301-342)||(15301557-15301598)


Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 13 - 342
Target Start/End: Original strand, 40836439 - 40836767
Alignment:
Q  13 atactagcagcattgacaattataaataacaaccaataatgtaaaatcactaaataacatatttcatttaactaatagtttattggctcaactaaacatc 112  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40836439 atactagcagcattgacaattacaaataacaaccaataatgtaaaatcactaaataacatatttcatttaactaatagtttattggctcaactaaacatc 40836538  T
Q  113 ttatcccttaacataaggatttgggcacaaacatcgctaagaacactctttttctaaaactcatttaacattcactttcttagaggataatagatatttt 212  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40836539 ttatcccttaacataaggatttgggcacaaacatagctaagaacactctttttctaaaactcatttaacattcactttcttagaggataatagatatttt 40836638  T
Q  213 ggttcctggatgtgtaacgactaacgagtagtcacaatagttcttaattatattgaactttgaaatactctttaattgtacgcttccttagtcaaaatag 312  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||  |||||||||||||    
T  40836639 gg-tcctggatgtgtaacgactaacgagtagtcacaatagttcttaattatattgaactttgaaatactttttaattgtgcgctttgttagtcaaaatag 40836737  T
Q  313 tctctgatattaaaatgcttcattaatatt 342  Q
    ||| ||||||||||||||||||||||||||    
T  40836738 tctgtgatattaaaatgcttcattaatatt 40836767  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 271 - 342
Target Start/End: Original strand, 7912543 - 7912614
Alignment:
Q  271 tttgaaatactctttaattgtacgcttccttagtcaaaatagtctctgatattaaaatgcttcattaatatt 342  Q
    ||||||||| ||| ||||||| | ||||  |||||||||||||| || ||||||||||||||||||||||||    
T  7912543 tttgaaatagtctctaattgtgcacttcactagtcaaaatagtccctcatattaaaatgcttcattaatatt 7912614  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 342
Target Start/End: Complemental strand, 4161895 - 4161853
Alignment:
Q  300 ttagtcaaaatagtctctgatattaaaatgcttcattaatatt 342  Q
    |||||||||||||||| ||||||||||||| ||||||||||||    
T  4161895 ttagtcaaaatagtctatgatattaaaatgtttcattaatatt 4161853  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 342
Target Start/End: Complemental strand, 8170973 - 8170931
Alignment:
Q  300 ttagtcaaaatagtctctgatattaaaatgcttcattaatatt 342  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||    
T  8170973 ttagtcaaaataatctctaatattaaaatgtttcattaatatt 8170931  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 342
Target Start/End: Complemental strand, 46433593 - 46433551
Alignment:
Q  300 ttagtcaaaatagtctctgatattaaaatgcttcattaatatt 342  Q
    ||||||||||||||  |||||||||||||| ||||||||||||    
T  46433593 ttagtcaaaatagttcctgatattaaaatgtttcattaatatt 46433551  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 342
Target Start/End: Complemental strand, 51234475 - 51234433
Alignment:
Q  300 ttagtcaaaatagtctctgatattaaaatgcttcattaatatt 342  Q
    ||||||||||||||||||||| |||||||| || |||||||||    
T  51234475 ttagtcaaaatagtctctgatgttaaaatgttttattaatatt 51234433  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 328
Target Start/End: Complemental strand, 33361092 - 33361064
Alignment:
Q  300 ttagtcaaaatagtctctgatattaaaat 328  Q
    |||||||||||||||||||||||||||||    
T  33361092 ttagtcaaaatagtctctgatattaaaat 33361064  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 342
Target Start/End: Original strand, 33747358 - 33747405
Alignment:
Q  295 cttccttagtcaaaatagtctctgatattaaaatgcttcattaatatt 342  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||    
T  33747358 cttcgttagtcaaaatagtctctgatattaaaatgctccattaatatt 33747405  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 287 - 342
Target Start/End: Complemental strand, 50155800 - 50155745
Alignment:
Q  287 attgtacgcttccttagtcaaaatagtctctgatattaaaatgcttcattaatatt 342  Q
    |||||||  ||| ||||||||||||||| |||||||||||||| ||||||||||||    
T  50155800 attgtacaattcattagtcaaaatagtcactgatattaaaatgtttcattaatatt 50155745  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 287 - 342
Target Start/End: Complemental strand, 23567353 - 23567300
Alignment:
Q  287 attgtacgcttccttagtcaaaatagtctctgatattaaaatgcttcattaatatt 342  Q
    ||||||| |||| ||||||||||||||||  |||||||||||||||||||||||||    
T  23567353 attgtacacttcgttagtcaaaatagtct--gatattaaaatgcttcattaatatt 23567300  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 342
Target Start/End: Complemental strand, 12832281 - 12832243
Alignment:
Q  304 tcaaaatagtctctgatattaaaatgcttcattaatatt 342  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  12832281 tcaaaatagtctcttatattaaaatgcttcattaatatt 12832243  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 342
Target Start/End: Complemental strand, 47199973 - 47199931
Alignment:
Q  300 ttagtcaaaatagtctctgatattaaaatgcttcattaatatt 342  Q
    |||||||||||||| || |||||||||||||||||||||||||    
T  47199973 ttagtcaaaatagtttccgatattaaaatgcttcattaatatt 47199931  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 342
Target Start/End: Original strand, 5800186 - 5800291
Alignment:
Q  238 gagtagtcacaatagttcttaattatattga-actttgaaatactctttaattgtacgcttccttagtcaaaatagtctctgatattaaaatgcttcatt 336  Q
    |||||||||||||||||||| | |||||||| | ||| ||||| || |||||| | ||||   |||||||||||||||||| | ||||||||| ||  ||    
T  5800186 gagtagtcacaatagttcttcaatatattgatattttaaaatagtccttaattatgcgctatattagtcaaaatagtctcttacattaaaatgtttgttt 5800285  T
Q  337 aatatt 342  Q
    ||||||    
T  5800286 aatatt 5800291  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 342
Target Start/End: Complemental strand, 14194933 - 14194893
Alignment:
Q  302 agtcaaaatagtctctgatattaaaatgcttcattaatatt 342  Q
    |||||| |||||||||||||||||||| |||||||||||||    
T  14194933 agtcaatatagtctctgatattaaaatacttcattaatatt 14194893  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 342
Target Start/End: Complemental strand, 20936528 - 20936488
Alignment:
Q  302 agtcaaaatagtctctgatattaaaatgcttcattaatatt 342  Q
    |||||||||||| ||||||||||||||| ||||||||||||    
T  20936528 agtcaaaatagtttctgatattaaaatgtttcattaatatt 20936488  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 342
Target Start/End: Complemental strand, 4964300 - 4964258
Alignment:
Q  300 ttagtcaaaatagtctctgatattaaaatgcttcattaatatt 342  Q
    |||||||||||||| | ||||||||||||||||||||||||||    
T  4964300 ttagtcaaaatagtttttgatattaaaatgcttcattaatatt 4964258  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 328
Target Start/End: Original strand, 11589962 - 11590004
Alignment:
Q  286 aattgtacgcttccttagtcaaaatagtctctgatattaaaat 328  Q
    |||||||| |||| |||||||||||||||| ||||||||||||    
T  11589962 aattgtacacttcgttagtcaaaatagtctttgatattaaaat 11590004  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 342
Target Start/End: Original strand, 42844908 - 42844968
Alignment:
Q  282 ctttaattgtacgcttccttagtcaaaatagtctctgatattaaaatgcttcattaatatt 342  Q
    |||| ||||||| |||  ||||||||||||||  |||||||||||||| ||||||||||||    
T  42844908 ctttgattgtacacttaattagtcaaaatagttcctgatattaaaatgtttcattaatatt 42844968  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 334
Target Start/End: Complemental strand, 14461797 - 14461750
Alignment:
Q  287 attgtacgcttccttagtcaaaatagtctctgatattaaaatgcttca 334  Q
    ||||||| |||| ||||||||||||||| | |||||||||||||||||    
T  14461797 attgtacacttcgttagtcaaaatagtccccgatattaaaatgcttca 14461750  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 342
Target Start/End: Original strand, 27001210 - 27001252
Alignment:
Q  300 ttagtcaaaatagtctctgatattaaaatgcttcattaatatt 342  Q
    |||||||||||||||| |||| ||||||| |||||||||||||    
T  27001210 ttagtcaaaatagtctttgatgttaaaatacttcattaatatt 27001252  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 5362338 - 5362379
Alignment:
Q  300 ttagtcaaaatagtctctgatattaaaatgcttcattaatat 341  Q
    ||||||||||||||| ||||||||||||| |||| |||||||    
T  5362338 ttagtcaaaatagtccctgatattaaaatacttcgttaatat 5362379  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 342
Target Start/End: Complemental strand, 15301598 - 15301557
Alignment:
Q  301 tagtcaaaatagtctctgatattaaaatgcttcattaatatt 342  Q
    ||||||||||||||||||| |||||||| |||| ||||||||    
T  15301598 tagtcaaaatagtctctgacattaaaatacttcgttaatatt 15301557  T

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