View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18683_low_29 (Length: 339)
Name: NF18683_low_29
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18683_low_29 |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 24 - 325
Target Start/End: Original strand, 4950924 - 4951226
Alignment:
| Q |
24 |
tatttaaaacctggtatattgtgatttcaagcgacacctgcaccacttgatgatattatcaagttttttatgaatgaaagatgggg-gtatgcagagaag |
122 |
Q |
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| T |
4950924 |
tatttacaaccttgtatattgtgatttcaagcgacacctgcaccacttgatgatattatcaagttttttatgaatgaaagatggggggtatgcagagaag |
4951023 |
T |
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| Q |
123 |
accataaaaaacctcgtccacaatgtttatagtggatacccttttgattcattatatgttttgctacttgaggtatccactatcactatcaccagaacct |
222 |
Q |
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| T |
4951024 |
accataaaaaacctcgtccacaatgtttttagtggatacccttttgattcattatatgttttgctacttgaggtatccactatcactatcaccagaacct |
4951123 |
T |
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| Q |
223 |
ccaccatcatttgtcctattggccctgtagtagttactctgttcaacaatggacacccttttggatgttctttcaaaacatatgatacattgttttacta |
322 |
Q |
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| T |
4951124 |
ccaccatcatttgtcatattggccctgtagtagttactcttttcaacaatggacacccttttggatgttctttcaaaacatatgatacattgttttacta |
4951223 |
T |
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| Q |
323 |
ttg |
325 |
Q |
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||| |
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| T |
4951224 |
ttg |
4951226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 144 - 325
Target Start/End: Complemental strand, 10484846 - 10484677
Alignment:
| Q |
144 |
aatgtttatagtggatacccttttgattcattatatgttttgctacttgaggtatccactatcactatcaccagaacctccaccatcatttgtcctattg |
243 |
Q |
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| T |
10484846 |
aatgtttttagtggatactcttttgatt----atatgttttgctacttgaggtatccactatcac------cagaacctccaccatcatttgtcctattg |
10484757 |
T |
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| Q |
244 |
gccctgtagtagttactctgttcaacaatggacaccctttt--ggatgttctttcaaaacatatgatacattgttttactattg |
325 |
Q |
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| T |
10484756 |
accct---gtagttactatgttcaacaatggacaccctttttctgatgttctttcaaaa-atatgatacattgttttactattg |
10484677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 93 - 208
Target Start/End: Complemental strand, 223878 - 223756
Alignment:
| Q |
93 |
atgaatgaaagatgggggtatgcagagaagaccat-----------aaaaaacctcgtccacaatgtttatagtggatacccttttgattcattatatgt |
181 |
Q |
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| T |
223878 |
atgaatgaaagatgggggtatgcagagaagaccatgatggcctcataaaaaacctcgtccacaatgtttttagtggatacacttttgattg----tatgt |
223783 |
T |
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| Q |
182 |
tttgctacttgaggtatccactatcac |
208 |
Q |
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| T |
223782 |
tttgctacttgaggtatccactatcac |
223756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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