View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18683_low_3 (Length: 618)
Name: NF18683_low_3
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18683_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 8 - 604
Target Start/End: Original strand, 8926500 - 8927096
Alignment:
| Q |
8 |
aagcaaaggtttggagtgtgttcagtcagaaataaatgatttggattgggaaagcactttctttttgcgccatcttccttcttctaatatttcagagatc |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8926500 |
aagcaaaggtttggagtgtgttcagtcagaaataaatgatttggattgggaaagcactttctttttgcgccatcttccttcttctaatatttcagagatc |
8926599 |
T |
|
| Q |
108 |
ccagatcttgatgaagattacaggtcacatattttaatgttttgttaaaatatatatttagtatttaattcatatacaccatcagcgtnnnnnnnnttac |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
8926600 |
ccagatcttgatgaagattacaggtcacatattttaatgttttgttaaaatatatatttagtatttaattcatatacactgtcagcgtaaaaaaaattac |
8926699 |
T |
|
| Q |
208 |
tattataattatttctaaagtcacacatataaaatcatatacttaaactcatatatttatatctttgtgaatttcaggaagacaatgaaggaatttgcag |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8926700 |
tattataattatttctaaagtcacacatataaaatcatatacttaaactcatatatttatatctttgtgaatttcaggaagacaatgaaggaatttgcag |
8926799 |
T |
|
| Q |
308 |
agaaattggagaaactggcagaggaacttcttgacttattgtgtgagaatcttgaacttgagaaagggtacttgaagaaagtgttttatggatcaaaggg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8926800 |
agaaattggagaaactggcagaggaacttcttgacttattgtgtgagaatcttggacttgagaaagggtacttgaagaaagtgttttatggatcaaaggg |
8926899 |
T |
|
| Q |
408 |
tccaaattttggtacaaaagttagtaactaccctccttgtcctaagcctgatctcatcaagggacttagagcgcacacagatgctggtggcatcatcctt |
507 |
Q |
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| T |
8926900 |
tccaaattttggtacaaaagttagtaactaccctccttgtcctaagcctgatctcatcaagggacttagagcacacacagatgctggtggcatcatcctt |
8926999 |
T |
|
| Q |
508 |
ctcttccaagatgacaaagtcagtggacttcagcttctcaaagatgaccaatggattgatgtccctccaatgcctcactctattgtcatcaaccttg |
604 |
Q |
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| T |
8927000 |
ctcttccaagatgacaaagtcagtggacttcagcttctcaaagatgaccaatggattgatgtccctccaatgcctcactctattgtcatcaaccttg |
8927096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 9e-44; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 410 - 604
Target Start/End: Original strand, 55527991 - 55528185
Alignment:
| Q |
410 |
caaattttggtacaaaagttagtaactaccctccttgtcctaagcctgatctcatcaagggacttagagcgcacacagatgctggtggcatcatccttct |
509 |
Q |
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|||||||||| || |||||||| ||||||||||||||||||||||| ||||| ||||| ||||| ||||| || ||||||||||||||||| || | || |
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| T |
55527991 |
caaattttggaaccaaagttagcaactaccctccttgtcctaagccagatcttatcaaaggactcagagcccatacagatgctggtggcataattttact |
55528090 |
T |
|
| Q |
510 |
cttccaagatgacaaagtcagtggacttcagcttctcaaagatgaccaatggattgatgtccctccaatgcctcactctattgtcatcaaccttg |
604 |
Q |
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| T |
55528091 |
cttccaagatgacaaggttggcggacttcagctccttaaagatggccaatggattgatgtcccaccaatgcgccattccattgttatcaaccttg |
55528185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 8 - 134
Target Start/End: Original strand, 55523247 - 55523373
Alignment:
| Q |
8 |
aagcaaaggtttggagtgtgttcagtcagaaataaatgatttggattgggaaagcactttctttttgcgccatcttccttcttctaatatttcagagatc |
107 |
Q |
| |
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|||||||||||| |||| || |||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||||| | ||| || ||||||||| |
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| T |
55523247 |
aagcaaaggtttagagtttgctcagtctgaaattaatgacttggattgggaaagcactttctttttgcgccaccttcctaactttaacatatcagagatc |
55523346 |
T |
|
| Q |
108 |
ccagatcttgatgaagattacaggtca |
134 |
Q |
| |
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| T |
55523347 |
cctgatcttgatcatgactacaggtca |
55523373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 277 - 419
Target Start/End: Original strand, 55523582 - 55523724
Alignment:
| Q |
277 |
aatttcaggaagacaatgaaggaatttgcagagaaattggagaaactggcagaggaacttcttgacttattgtgtgagaatcttgaacttgagaaagggt |
376 |
Q |
| |
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||||| ||||||| ||||||||||||||||| | || | ||||| ||||| ||| |||||||||||| ||||||||||||||| || |||||||| | |
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| T |
55523582 |
aattttaggaagataatgaaggaatttgcagtggaacttgagaacctggctgagctacttcttgactttctgtgtgagaatcttgggctagagaaaggtt |
55523681 |
T |
|
| Q |
377 |
acttgaagaaagtgttttatggatcaaagggtccaaattttgg |
419 |
Q |
| |
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| T |
55523682 |
atttgaagaaagtctttcatggatccaagggaccaaattttgg |
55523724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 290 - 604
Target Start/End: Original strand, 37629326 - 37629640
Alignment:
| Q |
290 |
caatgaaggaatttgcagagaaattggagaaactggcagaggaacttcttgacttattgtgtgagaatcttgaacttgagaaagggtacttgaagaaagt |
389 |
Q |
| |
|
|||||||||||||||| ||| | |||| ||| |||||||| || || |||||||| ||||| ||||||| ||| || || |||||| | || || | |
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| T |
37629326 |
caatgaaggaatttgctttgaagctagagacacttgcagaggagctactagacttattatgtgaaaatcttggactagaaaaggggtacctaaaaaaggc |
37629425 |
T |
|
| Q |
390 |
gttttatggatcaaagggtccaaattttggtacaaaagttagtaactaccctccttgtcctaagcctgatctcatcaagggacttagagcgcacacagat |
489 |
Q |
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|| |||||||||||||| |||| |||||| || || ||| ||||||||||| || || || || || || | ||||| || | || ||||| ||| |
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| T |
37629426 |
tttgtatggatcaaagggaccaacttttggaaccaaggttgcaaactaccctccatgcccaaaaccagaccttgtaaagggtctccgtgcacacaccgat |
37629525 |
T |
|
| Q |
490 |
gctggtggcatcatccttctcttccaagatgacaaagtcagtggacttcagcttctcaaagatgaccaatggattgatgtccctccaatgcctcactcta |
589 |
Q |
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|| ||||| ||||||||||| |||||||||||||| |||||||| ||||||||||||||||||| | ||| | ||||||||||| |||| ||| || | |
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| T |
37629526 |
gccggtggaatcatccttcttttccaagatgacaaggtcagtggccttcagcttctcaaagatggtaactgggtagatgtccctcccatgcatcattcca |
37629625 |
T |
|
| Q |
590 |
ttgtcatcaaccttg |
604 |
Q |
| |
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||||||||||||||| |
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| T |
37629626 |
ttgtcatcaaccttg |
37629640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 316 - 580
Target Start/End: Complemental strand, 36872195 - 36871931
Alignment:
| Q |
316 |
gagaaactggcagaggaacttcttgacttattgtgtgagaatcttgaacttgagaaagggtacttgaagaaagtgttttatggatcaaagggtccaaatt |
415 |
Q |
| |
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|||||||| ||||| || ||| | || || || ||||||||||||| ||| |||||||| ||| | || || | ||||||||||||| || |||| || |
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| T |
36872195 |
gagaaactagcagaagagcttttggatttgttatgtgagaatcttggactagagaaaggttaccttaaaaaggcattttatggatcaagaggaccaactt |
36872096 |
T |
|
| Q |
416 |
ttggtacaaaagttagtaactaccctccttgtcctaagcctgatctcatcaagggacttagagcgcacacagatgctggtggcatcatccttctcttcca |
515 |
Q |
| |
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|||| || ||||| |||||||||| || || || || || || | ||||| ||| | || ||||| ||||| || || ||||||||||||||||| |
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| T |
36872095 |
ttggcaccaaagtagccaactaccctcaatgcccaaatccagagctggtgaagggtcttcgtgctcacaccgatgccggaggaatcatccttctcttcca |
36871996 |
T |
|
| Q |
516 |
agatgacaaagtcagtggacttcagcttctcaaagatgaccaatggattgatgtccctccaatgc |
580 |
Q |
| |
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||||| || |||||||| || || | |||||||||| ||| ||| ||||||| || ||||||| |
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| T |
36871995 |
ggatgataaggtcagtggcctacaattgctcaaagatggccagtgggttgatgttcccccaatgc |
36871931 |
T |
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