View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18683_low_33 (Length: 319)
Name: NF18683_low_33
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18683_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 31469952 - 31469635
Alignment:
| Q |
1 |
tcatcatgtaaaattatttaactttgaacttaacttcatttgaacggaacataaatttagaaaaagagacatatcaatatatttgacttttaaggattan |
100 |
Q |
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| T |
31469952 |
tcatcatgtaaaattatttaactttgaacttaacttcatttgaacggaacataaatttagaaaaagagacatatcaatatatttgacttttaaggattat |
31469853 |
T |
|
| Q |
101 |
nnnnnnnnataaagcataggaaatcaaaattcaatgtaaagatgtcacacatacgacttcatgatgttgcc-tataacatttaagtctataaa---gcat |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| | || |
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| T |
31469852 |
tttt----ataaagcataggaaatcaaaattcaatgtaaagatgtcacacatacgacttcatgatgttaccctataacatttaagtctataaaaaagtat |
31469757 |
T |
|
| Q |
197 |
caaaaagaaagtggttcttctgtatgtttcatcctaccaagcctcaataatttctagctcttcaggttccttaaccaaatgaaaccctttttgcacatgt |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31469756 |
caaaaagaaagtggttcttctgtatgtttcatcctaccaagcctcaataatttctagctcttcaggttccttaaccaaatgaaaccctttttgcacatgt |
31469657 |
T |
|
| Q |
297 |
tccatgcacttttgctactact |
318 |
Q |
| |
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| |||||||||||||||||||| |
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| T |
31469656 |
tacatgcacttttgctactact |
31469635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 30363474 - 30363515
Alignment:
| Q |
14 |
ttatttaactttgaacttaacttcatttgaacggaacataaa |
55 |
Q |
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| T |
30363474 |
ttattaaactttgaacttaacttcatttgaacggaacataaa |
30363515 |
T |
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