View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18683_low_35 (Length: 302)

Name: NF18683_low_35
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18683_low_35
NF18683_low_35
[»] chr6 (4 HSPs)
chr6 (1-278)||(21015983-21016260)
chr6 (10-98)||(21979439-21979527)
chr6 (203-250)||(21979278-21979325)
chr6 (206-246)||(14197337-14197377)
[»] chr4 (45 HSPs)
chr4 (1-255)||(48852840-48853097)
chr4 (124-278)||(49043790-49043944)
chr4 (11-252)||(45371722-45371963)
chr4 (198-278)||(48147335-48147415)
chr4 (124-278)||(49048177-49048330)
chr4 (163-255)||(49038523-49038615)
chr4 (1-120)||(49043975-49044094)
chr4 (200-282)||(7790441-7790523)
chr4 (199-255)||(48864395-48864451)
chr4 (192-244)||(7773481-7773533)
chr4 (192-255)||(7878736-7878799)
chr4 (198-253)||(45384539-45384594)
chr4 (204-282)||(7771760-7771838)
chr4 (200-282)||(7908663-7908745)
chr4 (192-253)||(45365867-45365928)
chr4 (198-255)||(48156074-48156131)
chr4 (200-248)||(48903316-48903364)
chr4 (200-251)||(7766003-7766054)
chr4 (200-255)||(7813838-7813893)
chr4 (209-255)||(37826635-37826681)
chr4 (200-248)||(47208238-47208286)
chr4 (200-284)||(48886607-48886691)
chr4 (20-120)||(49048361-49048461)
chr4 (204-255)||(7237388-7237439)
chr4 (200-255)||(7786825-7786880)
chr4 (200-255)||(7800998-7801053)
chr4 (12-119)||(48705169-48705276)
chr4 (200-255)||(50666676-50666731)
chr4 (10-80)||(48903123-48903193)
chr4 (10-52)||(50250625-50250667)
chr4 (192-245)||(48899093-48899146)
chr4 (200-248)||(48861649-48861697)
chr4 (200-276)||(48870921-48870997)
chr4 (20-80)||(48876030-48876090)
chr4 (200-276)||(48876225-48876301)
chr4 (201-249)||(50672860-50672908)
chr4 (8-118)||(48147501-48147611)
chr4 (10-51)||(7773683-7773724)
chr4 (210-251)||(48734174-48734215)
chr4 (213-253)||(48735058-48735098)
chr4 (8-56)||(48861420-48861468)
chr4 (20-48)||(48863425-48863453)
chr4 (12-80)||(48870718-48870786)
chr4 (12-80)||(48886404-48886472)
chr4 (20-48)||(49041006-49041034)
[»] chr3 (4 HSPs)
chr3 (10-255)||(11024148-11024393)
chr3 (8-276)||(11005552-11005820)
chr3 (10-276)||(11015115-11015381)
chr3 (13-243)||(47451557-47451793)
[»] chr8 (6 HSPs)
chr8 (1-98)||(4031711-4031808)
chr8 (195-249)||(4031577-4031631)
chr8 (198-255)||(12195683-12195740)
chr8 (198-255)||(12440111-12440168)
chr8 (198-255)||(4962161-4962221)
chr8 (200-255)||(15349244-15349299)
[»] chr7 (1 HSPs)
chr7 (192-255)||(48884177-48884240)
[»] chr5 (7 HSPs)
chr5 (192-269)||(9120116-9120193)
chr5 (199-255)||(42561978-42562034)
chr5 (192-243)||(179411-179462)
chr5 (198-254)||(29688488-29688544)
chr5 (13-96)||(29696401-29696484)
chr5 (8-48)||(179218-179258)
chr5 (203-255)||(29696600-29696652)
[»] chr1 (3 HSPs)
chr1 (193-255)||(24310570-24310632)
chr1 (205-255)||(24367531-24367581)
chr1 (193-255)||(24416132-24416194)


Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 21015983 - 21016260
Alignment:
Q  1 gggtcggtttttaatgggactattcattggttggcttttcgtcatgatttatcaatgaaagttatcattgcctttgatttgatagaaagaaaacttttcg 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21015983 gggtcggtttttaatggggctattcattggttggcttttcgtcatgatttatcaatgaaagttatcattgcctttgatttgatagaaagaaaacttttcg 21016082  T
Q  101 acatgtctttgccggatgatatggaacatgaacctatatattgtgatttgtgggtcttcggtgaatttttgagtgtatggactatggagagtgatatagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  21016083 acatgtctttgccggatgatatggaacatgaacctatatattgtgatttgtgggtattcggtgaatttttgagtgtatggactatggatagtgatatagt 21016182  T
Q  201 tgaaatatgggtgatgaaagaatacaaagtacattcgtcttggactaagactcttactttctctattgatgacattcc 278  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21016183 tgaaatatgggttatgaaagaatacaaagtacattcgtcttggactaagactcttactttctctattgatgacattcc 21016260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 21979527 - 21979439
Alignment:
Q  10 tttaatgggactattcattggttggcttttcgtcatgatttatcaatgaaagttatcattgcctttgatttgatagaaagaaaactttt 98  Q
    |||||| || |||||||||||||| |||||||  ||||||||||  ||   |||||  ||||||||||||| |||||||| ||||||||    
T  21979527 tttaatagggctattcattggttgacttttcggtatgatttatctgtgtttgttattgttgcctttgatttaatagaaaggaaactttt 21979439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 250
Target Start/End: Complemental strand, 21979325 - 21979278
Alignment:
Q  203 aaatatgggtgatgaaagaatacaaagtacattcgtcttggactaaga 250  Q
    |||||||||||||||||||||||||||| | ||| ||||||| |||||    
T  21979325 aaatatgggtgatgaaagaatacaaagtgcgttcctcttggaataaga 21979278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 14197377 - 14197337
Alignment:
Q  206 tatgggtgatgaaagaatacaaagtacattcgtcttggact 246  Q
    ||||||||||||||||||||||| | ||||| |||||||||    
T  14197377 tatgggtgatgaaagaatacaaaatgcattcatcttggact 14197337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 4e-47; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 48852840 - 48853097
Alignment:
Q  1 gggtcggtttttaatgggactattcattggttggcttttcgtcatgatttatcaatgaaa---gttatcattgcctttgatttgatagaaagaaaacttt 97  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||    |||||  | ||||||||||| || ||||| |||||||    
T  48852840 gggtcgctttttaatggggctattcattggttggcttttcgtcatgatttaccaatgaataatgttattgtggcctttgatttaatggaaaggaaacttt 48852939  T
Q  98 tcgacatgtctttgccggatgatatggaacatgaacctatatattgtgatttgtgggtcttcggtgaatttttgagtgtatggactatggagagtgatat 197  Q
    | ||  ||||||||||||||||| |  | ||||||||||  ||||| ||||||||||| ||  | |||||| | ||| |||||   |||| |  |||||     
T  48852940 tagagttgtctttgccggatgatttttaccatgaacctacctattgcgatttgtgggtatttagagaatttctaagtatatgggtcatgggggatgatac 48853039  T
Q  198 agttgaaatatgggtgatgaaagaatacaaagtacattcgtcttggactaagactctt 255  Q
    ||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||    
T  48853040 agttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactctt 48853097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 124 - 278
Target Start/End: Complemental strand, 49043944 - 49043790
Alignment:
Q  124 gaacatgaacctatatattgtgatttgtgggtcttcggtgaatttttgagtgtatggactatggagagtgatatagttgaaatatgggtgatgaaagaat 223  Q
    ||||||||||||| | |||||||||||||||| || |||||| || | |||||||||||||   ||| ||||||||||||||||||||||||||||||||    
T  49043944 gaacatgaacctacagattgtgatttgtgggtatttggtgaacttcttagtgtatggactagacagaatgatatagttgaaatatgggtgatgaaagaat 49043845  T
Q  224 acaaagtacattcgtcttggactaagactcttactttctctattgatgacattcc 278  Q
    ||||||| |||||||| |||||||||||||||  ||| |||||||||| ||||||    
T  49043844 acaaagtgcattcgtcatggactaagactcttgttttttctattgatgtcattcc 49043790  T

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Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 45371963 - 45371722
Alignment:
Q  11 ttaatgggactattcattggttggcttttcgtcatgatttatcaatgaaagttatcattgcctttgatttgatagaaagaaaacttttcgacatgtcttt 110  Q
    |||||||| ||||| |||||||| ||||||||||||||||||| ||||  |||||  ||||||||||||| || ||| | |||||||| || ||||||||    
T  45371963 ttaatggggctatttattggttgtcttttcgtcatgatttatcgatgagtgttattcttgcctttgatttaatggaacggaaacttttagagatgtcttt 45371864  T
Q  111 gccggatgatatggaacatgaacctatatattgtgatttgtgggtcttcggtgaatttttgagtgtatggactatggagagtgatatagttgaaatatgg 210  Q
    ||| |||| | | || | ||  |||| |||||||||||| ||||| |||||  ||||| | ||| | ||| ||| | ||   |||| |||||||||||||    
T  45371863 gcctgatggttttgaccctggtcctacatattgtgatttttgggtattcggaaaatttctcagtctttgggctaagaaggaagatacagttgaaatatgg 45371764  T
Q  211 gtgatgaaagaatacaaagtacattcgtcttggactaagact 252  Q
    || ||||||||||||||||| |||||||||||||||||||||    
T  45371763 gttatgaaagaatacaaagtgcattcgtcttggactaagact 45371722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 198 - 278
Target Start/End: Complemental strand, 48147415 - 48147335
Alignment:
Q  198 agttgaaatatgggtgatgaaagaatacaaagtacattcgtcttggactaagactcttactttctctattgatgacattcc 278  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||| ||||||    
T  48147415 agttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagactcttaatttgtctattgatggcattcc 48147335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 124 - 278
Target Start/End: Complemental strand, 49048330 - 49048177
Alignment:
Q  124 gaacatgaacctatatattgtgatttgtgggtcttcggtgaatttttgagtgtatggactatggagagtgatatagttgaaatatgggtgatgaaagaat 223  Q
    |||||| |||||| | |||||||||||||||| || ||||| ||| | ||||||||||||| | ||  |||||||||||||||||||||||||||||| |    
T  49048330 gaacattaacctacagattgtgatttgtgggtatt-ggtgagtttctcagtgtatggactaagcaggatgatatagttgaaatatgggtgatgaaagagt 49048232  T
Q  224 acaaagtacattcgtcttggactaagactcttactttctctattgatgacattcc 278  Q
    | ||||| |||||||| |||||||||||| ||  ||| |||| ||||| ||||||    
T  49048231 ataaagtgcattcgtcatggactaagacttttgttttttctactgatgtcattcc 49048177  T

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Target: chr4; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 163 - 255
Target Start/End: Complemental strand, 49038615 - 49038523
Alignment:
Q  163 gaatttttgagtgtatggactatggagagtgatatagttgaaatatgggtgatgaaagaatacaaagtacattcgtcttggactaagactctt 255  Q
    |||||| | ||||||||| |||||||| ||| ||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  49038615 gaatttctcagtgtatgggctatggagcgtgctaccgttgaaatatgggtgatgaaagaatacaaagttcattcgtcttggactaagactctt 49038523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 49044094 - 49043975
Alignment:
Q  1 gggtcggtttttaatgggactattcattggttggcttttcgtcatgatttatcaatgaaagttatcattgcctttgatttgatagaaagaaaacttttcg 100  Q
    |||||| | ||||||||| ||||||| ||||||||||||| || ||||||||||||||| |||||  ||||||||||||| || ||||| |||||||| |    
T  49044094 gggtcgctctttaatggggctattcactggttggcttttcatcttgatttatcaatgaatgttattgttgcctttgatttaattgaaaggaaacttttag 49043995  T
Q  101 acatgtctttgccggatgat 120  Q
    |||| |||||||| ||||||    
T  49043994 acatatctttgccagatgat 49043975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 200 - 282
Target Start/End: Original strand, 7790441 - 7790523
Alignment:
Q  200 ttgaaatatgggtgatgaaagaatacaaagtacattcgtcttggactaagactcttactttctctattgatgacattcctgat 282  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||  | | |||||||||| ||||||||||    
T  7790441 ttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttctttctattgatgccattcctgat 7790523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 48864395 - 48864451
Alignment:
Q  199 gttgaaatatgggtgatgaaagaatacaaagtacattcgtcttggactaagactctt 255  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  48864395 gttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagattctt 48864451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 7773533 - 7773481
Alignment:
Q  192 tgatatagttgaaatatgggtgatgaaagaatacaaagtacattcgtcttgga 244  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  7773533 tgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttgga 7773481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 192 - 255
Target Start/End: Original strand, 7878736 - 7878799
Alignment:
Q  192 tgatatagttgaaatatgggtgatgaaagaatacaaagtacattcgtcttggactaagactctt 255  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||| ||| ||||||    
T  7878736 tgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggattaaaactctt 7878799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 198 - 253
Target Start/End: Complemental strand, 45384594 - 45384539
Alignment:
Q  198 agttgaaatatgggtgatgaaagaatacaaagtacattcgtcttggactaagactc 253  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||    
T  45384594 agttgaaatatgggtgatgaaagaatataaagtgcattcgtcttggacaaagactc 45384539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 282
Target Start/End: Original strand, 7771760 - 7771838
Alignment:
Q  204 aatatgggtgatgaaagaatacaaagtacattcgtcttggactaagactcttactttctctattgatgacattcctgat 282  Q
    ||||||||||||||||||||||||||| |||||||| |||||||| ||||||  | | ||| |||||| ||||||||||    
T  7771760 aatatgggtgatgaaagaatacaaagtgcattcgtcatggactaaaactcttgttctttctgttgatgccattcctgat 7771838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 282
Target Start/End: Original strand, 7908663 - 7908745
Alignment:
Q  200 ttgaaatatgggtgatgaaagaatacaaagtacattcgtcttggactaagactcttactttctctattgatgacattcctgat 282  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||| ||| ||||||  | | ||| |||||| ||||||||||    
T  7908663 ttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggaataaaactcttgttctttctgttgatgccattcctgat 7908745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 192 - 253
Target Start/End: Complemental strand, 45365928 - 45365867
Alignment:
Q  192 tgatatagttgaaatatgggtgatgaaagaatacaaagtacattcgtcttggactaagactc 253  Q
    ||||| ||||||||||||||||||||||||||| ||||| | |||||||||||| |||||||    
T  45365928 tgatacagttgaaatatgggtgatgaaagaatataaagtgcgttcgtcttggacaaagactc 45365867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 198 - 255
Target Start/End: Complemental strand, 48156131 - 48156074
Alignment:
Q  198 agttgaaatatgggtgatgaaagaatacaaagtacattcgtcttggactaagactctt 255  Q
    ||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||    
T  48156131 agttgaaatatgggtgatgaacgaatacaaagtgcattcttcttggactaaaactctt 48156074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 48903316 - 48903364
Alignment:
Q  200 ttgaaatatgggtgatgaaagaatacaaagtacattcgtcttggactaa 248  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  48903316 ttgaaatatgggtgatgaaagaatacaaagtgcatttgtcttggactaa 48903364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 7766003 - 7766054
Alignment:
Q  200 ttgaaatatgggtgatgaaagaatacaaagtacattcgtcttggactaagac 251  Q
    |||||||||||||||||||||||||||||||  ||||||| |||||||||||    
T  7766003 ttgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagac 7766054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 7813838 - 7813893
Alignment:
Q  200 ttgaaatatgggtgatgaaagaatacaaagtacattcgtcttggactaagactctt 255  Q
    |||||||||||||| |||||||||||||||| ||||||||||||| ||| ||||||    
T  7813838 ttgaaatatgggtgttgaaagaatacaaagtgcattcgtcttggaataaaactctt 7813893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 37826681 - 37826635
Alignment:
Q  209 gggtgatgaaagaatacaaagtacattcgtcttggactaagactctt 255  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||    
T  37826681 gggtgatgaaagaatacaaactgcattcgtcttggactaagactctt 37826635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 47208238 - 47208286
Alignment:
Q  200 ttgaaatatgggtgatgaaagaatacaaagtacattcgtcttggactaa 248  Q
    |||||||| ||||||||||||||||||||||||| || |||||||||||    
T  47208238 ttgaaataagggtgatgaaagaatacaaagtacaatcatcttggactaa 47208286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 200 - 284
Target Start/End: Original strand, 48886607 - 48886691
Alignment:
Q  200 ttgaaatatgggtgatgaaagaatacaaagtacattcgtcttggactaagactcttactttctctattgatgacattcctgatga 284  Q
    ||||||| ||||||||||| |||||||||||  | ||||||||||| |||||||||  | | ||| ||||||||||| |||||||    
T  48886607 ttgaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgatgacatttctgatga 48886691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 49048461 - 49048361
Alignment:
Q  20 ctattcattggttggcttttcgtcatgatttatcaatgaaagttatcattgcctttgatttgatagaaagaaaacttttcgacatgtctttgccggatga 119  Q
    ||||||| ||||||||||||| || ||||||||| ||||| |||||  ||||||||||||| |  |||||||| ||| | || |||||| |||| |||||    
T  49048461 ctattcactggttggcttttcatcttgatttatcgatgaatgttattgttgcctttgatttaacggaaagaaaccttgtagatatgtctctgccagatga 49048362  T
Q  120 t 120  Q
    |    
T  49048361 t 49048361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 7237439 - 7237388
Alignment:
Q  204 aatatgggtgatgaaagaatacaaagtacattcgtcttggactaagactctt 255  Q
    ||||||||||||||||||||||||| | ||||||| ||||||||| ||||||    
T  7237439 aatatgggtgatgaaagaatacaaaatgcattcgttttggactaaaactctt 7237388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 7786825 - 7786880
Alignment:
Q  200 ttgaaatatgggtgatgaaagaatacaaagtacattcgtcttggactaagactctt 255  Q
    |||||||||||||||||||||||||||| || ||||  ||||||| ||||||||||    
T  7786825 ttgaaatatgggtgatgaaagaatacaacgtgcatttatcttggaataagactctt 7786880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 7800998 - 7801053
Alignment:
Q  200 ttgaaatatgggtgatgaaagaatacaaagtacattcgtcttggactaagactctt 255  Q
    |||||||||||||| ||||||| |||||||| ||||||||||||| ||| ||||||    
T  7800998 ttgaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactctt 7801053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 48705276 - 48705169
Alignment:
Q  12 taatgggactattcattggttggcttttcgtcatgatttatcaatgaaagttatcattgcctttgatttgatagaaagaaaacttttcgacatgtctttg 111  Q
    ||||||| |||||||||||||||||| |||||||||||||  || | | |||||  ||||||||||||| || |||||  ||||||| || |||  ||||    
T  48705276 taatggggctattcattggttggcttatcgtcatgatttacgaaaggatgttattgttgcctttgatttaatggaaagggaactttttgatatgcttttg 48705177  T
Q  112 ccggatga 119  Q
    || |||||    
T  48705176 ccagatga 48705169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 50666676 - 50666731
Alignment:
Q  200 ttgaaatatgggtgatgaaagaatacaaagtacattcgtcttggactaagactctt 255  Q
    ||||| ||||||||||| ||||||||||||| ||||| ||||||||||| ||||||    
T  50666676 ttgaattatgggtgatgtaagaatacaaagtgcattcatcttggactaaaactctt 50666731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 48903123 - 48903193
Alignment:
Q  10 tttaatgggactattcattggttggcttttcgtcatgatttatcaatgaaagttatcattgcctttgattt 80  Q
    ||||||||| ||||||||| ||||||||||| ||||||||||  || ||| |||||  |||||||||||||    
T  48903123 tttaatggggctattcattagttggcttttcatcatgatttaagaaagaatgttattgttgcctttgattt 48903193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 50250667 - 50250625
Alignment:
Q  10 tttaatgggactattcattggttggcttttcgtcatgatttat 52  Q
    ||||||||| ||||||||||||||||||||||| |||||||||    
T  50250667 tttaatggggctattcattggttggcttttcgttatgatttat 50250625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 48899093 - 48899146
Alignment:
Q  192 tgatatagttgaaatatgggtgatgaaagaatacaaagtacattcgtcttggac 245  Q
    ||||| ||||||||||||||||||||||||||| |||||| | || ||||||||    
T  48899093 tgatacagttgaaatatgggtgatgaaagaatataaagtaaaatcctcttggac 48899146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 48861649 - 48861697
Alignment:
Q  200 ttgaaatatgggtgatgaaagaatacaaagtacattcgtcttggactaa 248  Q
    ||||||||||||| || |||||||||||||| |||| ||||||||||||    
T  48861649 ttgaaatatgggtaataaaagaatacaaagtgcatttgtcttggactaa 48861697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 276
Target Start/End: Original strand, 48870921 - 48870997
Alignment:
Q  200 ttgaaatatgggtgatgaaagaatacaaagtacattcgtcttggactaagactcttactttctctattgatgacatt 276  Q
    ||||||| ||||||||||| |||||||||||  | ||||||||||| |||||||||  | | ||| |||||||||||    
T  48870921 ttgaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgatgacatt 48870997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 48876030 - 48876090
Alignment:
Q  20 ctattcattggttggcttttcgtcatgatttatcaatgaaagttatcattgcctttgattt 80  Q
    |||||||||||||||||| |||| ||||||||  || ||| |||||| |||||||||||||    
T  48876030 ctattcattggttggcttatcgtgatgatttacaaaagaatgttatccttgcctttgattt 48876090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 276
Target Start/End: Original strand, 48876225 - 48876301
Alignment:
Q  200 ttgaaatatgggtgatgaaagaatacaaagtacattcgtcttggactaagactcttactttctctattgatgacatt 276  Q
    ||||||| ||||||||||| |||||||||||  | ||||||||||| |||||||||  | | ||| |||||||||||    
T  48876225 ttgaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgatgacatt 48876301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 50672860 - 50672908
Alignment:
Q  201 tgaaatatgggtgatgaaagaatacaaagtacattcgtcttggactaag 249  Q
    ||||||||||||||||||| |||||||| | |||||||| |||||||||    
T  50672860 tgaaatatgggtgatgaaacaatacaaattgcattcgtcgtggactaag 50672908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 48147611 - 48147501
Alignment:
Q  8 tttttaatgggactattcattggttggcttttcgtcatgatttatcaatgaaagttatcattgcctttgatttgatagaaagaaaacttttcgacatgtc 107  Q
    |||||| |||| |||||||||||||||||||||   |||||||| ||| | | ||||| ||||| |||||||| || ||||| | |||||| || ||| |    
T  48147611 tttttagtggggctattcattggttggcttttcacaatgatttagcaagggatgttattattgcatttgatttaatggaaaggagacttttagagatgcc 48147512  T
Q  108 tttgccggatg 118  Q
    ||| || ||||    
T  48147511 ttttccagatg 48147501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 7773724 - 7773683
Alignment:
Q  10 tttaatgggactattcattggttggcttttcgtcatgattta 51  Q
    ||||||||| ||||||||||||||||||| |||| |||||||    
T  7773724 tttaatggggctattcattggttggctttgcgtcgtgattta 7773683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 48734174 - 48734215
Alignment:
Q  210 ggtgatgaaagaatacaaagtacattcgtcttggactaagac 251  Q
    ||||||||||||||||||||| ||||||| |||||| |||||    
T  48734174 ggtgatgaaagaatacaaagtgcattcgtattggacaaagac 48734215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 48735098 - 48735058
Alignment:
Q  213 gatgaaagaatacaaagtacattcgtcttggactaagactc 253  Q
    ||||||||||||||||||  |||||||||||||||| ||||    
T  48735098 gatgaaagaatacaaagtgaattcgtcttggactaaaactc 48735058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 48861420 - 48861468
Alignment:
Q  8 tttttaatgggactattcattggttggcttttcgtcatgatttatcaat 56  Q
    |||||||||||||||||||||  ||| |||||| || ||||||||||||    
T  48861420 tttttaatgggactattcattaattgacttttcatcgtgatttatcaat 48861468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 48
Target Start/End: Original strand, 48863425 - 48863453
Alignment:
Q  20 ctattcattggttggcttttcgtcatgat 48  Q
    |||||||||||||||||||||||||||||    
T  48863425 ctattcattggttggcttttcgtcatgat 48863453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 48870718 - 48870786
Alignment:
Q  12 taatgggactattcattggttggcttttcgtcatgatttatcaatgaaagttatcattgcctttgattt 80  Q
    ||||||| |||||||||||||||||| ||||  || ||||  || ||| |||||| |||||||||||||    
T  48870718 taatggggctattcattggttggcttatcgtgctggtttaggaaagaatgttatccttgcctttgattt 48870786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 48886404 - 48886472
Alignment:
Q  12 taatgggactattcattggttggcttttcgtcatgatttatcaatgaaagttatcattgcctttgattt 80  Q
    ||||||| |||||||||||||||||| ||||  || ||||  || ||| |||||| |||||||||||||    
T  48886404 taatggggctattcattggttggcttatcgtgctggtttaggaaagaatgttatccttgcctttgattt 48886472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 49041034 - 49041006
Alignment:
Q  20 ctattcattggttggcttttcgtcatgat 48  Q
    |||||||||||||||||||||||||||||    
T  49041034 ctattcattggttggcttttcgtcatgat 49041006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 10 - 255
Target Start/End: Complemental strand, 11024393 - 11024148
Alignment:
Q  10 tttaatgggactattcattggttggcttttcgtcatgatttatcaatgaaagttatcattgcctttgatttgatagaaagaaaacttttcgacatgtctt 109  Q
    |||||||||| ||||||||||||  |||||||  |||||||||||||| | ||||| ||||||||||||||  | |||||  ||||||| || ||| |||    
T  11024393 tttaatgggaatattcattggttctcttttcgcaatgatttatcaatggatgttattattgcctttgatttagtggaaagggaacttttggagatgcctt 11024294  T
Q  110 tgccggatgatatggaacatgaacctatatattgtgatttgtgggtcttcggtgaatttttgagtgtatggactatggagagtgatatagttgaaatatg 209  Q
    | || |||| | | || |||||||||||  |||||||||||||| | || || |||||| | ||| ||||| |||||| | |||  | | ||||||||||    
T  11024293 ttccagatggttttgatcatgaacctatggattgtgatttgtggatatttggagaatttctcagtctatgggctatggggggtgtaacaattgaaatatg 11024194  T
Q  210 ggtgatgaaagaatacaaagtacattcgtcttggactaagactctt 255  Q
    ||| ||||||||||||||||| ||||||||||||||||||||||||    
T  11024193 ggttatgaaagaatacaaagtgcattcgtcttggactaagactctt 11024148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 8 - 276
Target Start/End: Complemental strand, 11005820 - 11005552
Alignment:
Q  8 tttttaatgggactattcattggttggcttttcgtcatgatttatcaatgaaagttatcattgcctttgatttgatagaaagaaaacttttcgacatgtc 107  Q
    |||||||||||||||||||||||||  ||||||| |||||||| |||||| | |||||  ||| |||||||||  | ||||| |||||||| || ||| |    
T  11005820 tttttaatgggactattcattggttctcttttcgccatgatttgtcaatggatgttattgttggctttgatttagtggaaaggaaacttttagagatgcc 11005721  T
Q  108 tttgccggatgatatggaacatgaacctatatattgtgatttgtgggtcttcggtgaatttttgagtgtatggactatggagagtgatatagttgaaata 207  Q
    ||| ||  ||| | | || |||||||||||| |||||||||||||| | || || |||||| | ||| ||||| |||||| |  ||| | | ||||||||    
T  11005720 ttttccatatggttttgatcatgaacctatagattgtgatttgtggatatttggagaatttcttagtctatgggctatgggggatgaaacaattgaaata 11005621  T
Q  208 tgggtgatgaaagaatacaaagtacattcgtcttggactaagactcttactttctctattgatgacatt 276  Q
    ||||| ||||||||||||||||| |||||||||||||||||| |||||   || |||||||||| ||||    
T  11005620 tgggttatgaaagaatacaaagtgcattcgtcttggactaaggctcttgtcttatctattgatggcatt 11005552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 10 - 276
Target Start/End: Complemental strand, 11015381 - 11015115
Alignment:
Q  10 tttaatgggactattcattggttggcttttcgtcatgatttatcaatgaaagttatcattgcctttgatttgatagaaagaaaacttttcgacatgtctt 109  Q
    |||||||||||||||||||||||  ||||||| ||||||||||||||| | |||||  ||| |||||||||  | ||||| |||||||| || |||  ||    
T  11015381 tttaatgggactattcattggttctcttttcgccatgatttatcaatggatgttattgttggctttgatttagtggaaaggaaacttttggagatgcatt 11015282  T
Q  110 tgccggatgatatggaacatgaacctatatattgtgatttgtgggtcttcggtgaatttttgagtgtatggactatggagagtgatatagttgaaatatg 209  Q
    | || |||| | | ||  ||||||||||| |||||||||||||| | || || |||||| | ||| ||||| ||||||||  ||  | ||||||||||||    
T  11015281 ttccagatggttttgactatgaacctatagattgtgatttgtggatatttggagaatttctaagtctatgggctatggaggatggaacagttgaaatatg 11015182  T
Q  210 ggtgatgaaagaatacaaagtacattcgtcttggactaagactcttactttctctattgatgacatt 276  Q
    ||| ||||||||||||||||| ||||||||||||  ||| ||||||    | |||||||||||||||    
T  11015181 ggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgtcctatctattgatgacatt 11015115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 243
Target Start/End: Complemental strand, 47451793 - 47451557
Alignment:
Q  13 aatgggactattcattggttggcttttcgtcatgatttatcaatgaaagttatcattgcctttgatttgatagaaagaaaacttttcgacatgtctttgc 112  Q
    |||||| ||||| ||||||||||||||||||||||| |||| ||||| |||||   ||| |||||||| || ||||||||| |||| ||  ||  |||||    
T  47451793 aatggggctatttattggttggcttttcgtcatgatatatccatgaatgttattgctgcatttgatttaatggaaagaaaatttttagatgtgaatttgc 47451694  T
Q  113 cggatgatatggaacatgaacctatatattgtgatttgtgggtcttcggtgaatttttgagtgtatggactatggagagt------gatatagttgaaat 206  Q
    | |||||| | || ||||||||||   |||||| ||||||||| || || |||||| | ||| || ||  | ||||  ||      ||||||||||||||    
T  47451693 cagatgattttgaccatgaacctaccaattgtggtttgtgggtatttggagaatttcttagtctaagggttctggattgtcataatgatatagttgaaat 47451594  T
Q  207 atgggtgatgaaagaatacaaagtacattcgtcttgg 243  Q
    ||||||||||||||||||||||||  |||||||||||    
T  47451593 atgggtgatgaaagaatacaaagttaattcgtcttgg 47451557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 4031808 - 4031711
Alignment:
Q  1 gggtcggtttttaatgggactattcattggttggcttttcgtcatgatttatcaatgaaagttatcattgcctttgatttgatagaaagaaaactttt 98  Q
    |||||| |||||| |||  |||||||||||||||||||||||||||||||||| || || |||||| ||||||||||||| |  ||||||||||||||    
T  4031808 gggtcgctttttagtggatctattcattggttggcttttcgtcatgatttatcgataaatgttatcgttgcctttgatttaacggaaagaaaactttt 4031711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 249
Target Start/End: Complemental strand, 4031631 - 4031577
Alignment:
Q  195 tatagttgaaatatgggtgatgaaagaatacaaagtacattcgtcttggactaag 249  Q
    |||||||||||||||||| ||||||||||||||| | ||||||||||||||||||    
T  4031631 tatagttgaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaag 4031577  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 255
Target Start/End: Original strand, 12195683 - 12195740
Alignment:
Q  198 agttgaaatatgggtgatgaaagaatacaaagtacattcgtcttggactaagactctt 255  Q
    |||||||||||||| ||||||||||||||||  ||| || ||||||||||||||||||    
T  12195683 agttgaaatatgggagatgaaagaatacaaacaacaatcatcttggactaagactctt 12195740  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 255
Target Start/End: Original strand, 12440111 - 12440168
Alignment:
Q  198 agttgaaatatgggtgatgaaagaatacaaagtacattcgtcttggactaagactctt 255  Q
    |||||||||||||| ||||||||||||||||  ||| || ||||||||||||||||||    
T  12440111 agttgaaatatgggagatgaaagaatacaaacaacaatcatcttggactaagactctt 12440168  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 255
Target Start/End: Complemental strand, 4962221 - 4962161
Alignment:
Q  198 agttgaaatatgggtgatgaaagaatacaaagtacat---tcgtcttggactaagactctt 255  Q
    ||||||||||||||||||||||||||||||| | |||   ||||| |||||||||||||||    
T  4962221 agttgaaatatgggtgatgaaagaatacaaactgcattcgtcgtcgtggactaagactctt 4962161  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 15349244 - 15349299
Alignment:
Q  200 ttgaaatatgggtgatgaaagaatacaaagtacattcgtcttggactaagactctt 255  Q
    |||||||||||||||||||||||||||||||  | || |||||||| |||| ||||    
T  15349244 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattctt 15349299  T

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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 192 - 255
Target Start/End: Original strand, 48884177 - 48884240
Alignment:
Q  192 tgatatagttgaaatatgggtgatgaaagaatacaaagtacattcgtcttggactaagactctt 255  Q
    ||||| ||||||||||| ||||||||||||||||||||| |||  |||||||||||||||||||    
T  48884177 tgataaagttgaaatataggtgatgaaagaatacaaagtgcatatgtcttggactaagactctt 48884240  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 192 - 269
Target Start/End: Original strand, 9120116 - 9120193
Alignment:
Q  192 tgatatagttgaaatatgggtgatgaaagaatacaaagtacattcgtcttggactaagactcttactttctctattga 269  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||| |||||||  || ||||||  ||| ||||||||    
T  9120116 tgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcctcttggaagaaaactcttgttttgtctattga 9120193  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 42562034 - 42561978
Alignment:
Q  199 gttgaaatatgggtgatgaaagaatacaaagtacattcgtcttggactaagactctt 255  Q
    ||||| |||||||||||||||||||||||||| ||||| ||||||||||||| ||||    
T  42562034 gttgatatatgggtgatgaaagaatacaaagtgcattcatcttggactaagattctt 42561978  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 179411 - 179462
Alignment:
Q  192 tgatatagttgaaatatgggtgatgaaagaatacaaagtacattcgtcttgg 243  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||    
T  179411 tgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcatcttgg 179462  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 29688488 - 29688544
Alignment:
Q  198 agttgaaatatgggtgatgaaagaatacaaagtacattcgtcttggactaagactct 254  Q
    |||||||||||||||||||||| ||||||| || || ||||||||||| ||||||||    
T  29688488 agttgaaatatgggtgatgaaaaaatacaatgtgcaatcgtcttggacaaagactct 29688544  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 29696401 - 29696484
Alignment:
Q  13 aatgggactattcattggttggcttttcgtcatgatttatcaatgaaagttatcattgcctttgatttgatagaaagaaaactt 96  Q
    |||||| ||||||| ||||||||||||||| ||||| ||||||||   |||||  |||||||| |||| || ||||| ||||||    
T  29696401 aatggggctattcactggttggcttttcgtaatgatatatcaatgcctgttattgttgcctttcatttaattgaaaggaaactt 29696484  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 179218 - 179258
Alignment:
Q  8 tttttaatgggactattcattggttggcttttcgtcatgat 48  Q
    ||||||||||| |||||||||||||  ||||||||||||||    
T  179218 tttttaatggggctattcattggttctcttttcgtcatgat 179258  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 29696600 - 29696652
Alignment:
Q  203 aaatatgggtgatgaaagaatacaaagtacattcgtcttggactaagactctt 255  Q
    |||||||||||||| || ||||||| || || || ||||||||||||||||||    
T  29696600 aaatatgggtgatggaaaaatacaatgtgcaatcctcttggactaagactctt 29696652  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 24310570 - 24310632
Alignment:
Q  193 gatatagttgaaatatgggtgatgaaagaatacaaagtacattcgtcttggactaagactctt 255  Q
    |||| |||||| |||||||||||||||||||||||||| || || ||||||| ||| ||||||    
T  24310570 gataaagttgatatatgggtgatgaaagaatacaaagtgcagtcttcttggagtaaaactctt 24310632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 24367531 - 24367581
Alignment:
Q  205 atatgggtgatgaaagaatacaaagtacattcgtcttggactaagactctt 255  Q
    |||||||| ||| ||||||||||||| ||||||||||||||||| ||||||    
T  24367531 atatgggtaatggaagaatacaaagtgcattcgtcttggactaaaactctt 24367581  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 24416132 - 24416194
Alignment:
Q  193 gatatagttgaaatatgggtgatgaaagaatacaaagtacattcgtcttggactaagactctt 255  Q
    |||| |||||| |||||||||||||||||||||||||  || || ||||||||||| ||||||    
T  24416132 gatagagttgatatatgggtgatgaaagaatacaaagggcagtcatcttggactaaaactctt 24416194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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