View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18683_low_36 (Length: 296)
Name: NF18683_low_36
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18683_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 63 - 280
Target Start/End: Original strand, 36524516 - 36524736
Alignment:
| Q |
63 |
tgcttcagttagctgacattttgcgcgaagaacgagtccatatgaagctctcagaagccaaatatcaatttgaagagaaaagtgcaatgctagaaattct |
162 |
Q |
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| T |
36524516 |
tgcttcagttagccgacattttgcgcgaagaacgagtccatatgaagctctcagaagccaaatatcaatttgaagagaaaagtgcaatgctagaaattct |
36524615 |
T |
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| Q |
163 |
aagaaatgagcttgagaactttataagaaata---aagaagagaaaggtgatgatattgatgttaatccagggcttaataaactcaaggatcttgaattc |
259 |
Q |
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| T |
36524616 |
aagaaatgagcttgagaactttataagaaataaagaagaagagaaaggtgatgatattgatgttaatccagggcttaagaaactcaaggatcttgaattc |
36524715 |
T |
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| Q |
260 |
tatttgaacaaaacatttttg |
280 |
Q |
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| T |
36524716 |
tatttgaacaaaacatttttg |
36524736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 191
Target Start/End: Complemental strand, 18971160 - 18971032
Alignment:
| Q |
63 |
tgcttcagttagctgacattttgcgcgaagaacgagtccatatgaagctctcagaagccaaatatcaatttgaagagaaaagtgcaatgctagaaattct |
162 |
Q |
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||||||||||||| || |||||||||| || ||||||| |||||||| ||||| ||||| |||||||| |||||||||| || | |||||| || |
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| T |
18971160 |
tgcttcagttagcggatgttttgcgcgaggagagagtccagatgaagctttcagaggccaagtatcaattcgaagagaaaaatgattttgtagaaaagct |
18971061 |
T |
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| Q |
163 |
aagaaatgagcttgagaactttataagaa |
191 |
Q |
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| T |
18971060 |
aagaaatgagcttgaagactttatgagaa |
18971032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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