View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18683_low_38 (Length: 289)
Name: NF18683_low_38
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18683_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 22 - 268
Target Start/End: Complemental strand, 8719137 - 8718892
Alignment:
| Q |
22 |
tagactttgtgtcaccagaaaatgtggatatatgcatgcttttaactgaagagtttcgtcgccttcctaagaatcacagggcaagagaagacaaacttga |
121 |
Q |
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| T |
8719137 |
tagactttgtgtcaccagaaaatgtggatatatgcatgcttttaactgaagagtttcgtcgccttcctaagaatcacatggcaagagaagacaaacttga |
8719038 |
T |
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| Q |
122 |
ggtgattttaatattccctttttgtcttcctttcttttgatgtgaatttcaaactaagaaagttgaaaaggagaacataattgtagacaactttgcttaa |
221 |
Q |
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| T |
8719037 |
ggtgattttaatattcc-tttttgtcttcctttcttttgatgtgaatttcaaactaagaaagttgaaaaggagaacataattgtagacaactttgcttaa |
8718939 |
T |
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| Q |
222 |
tatttgtgtttatttacgaaacaggtaaaaaagatgataatccatgc |
268 |
Q |
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| T |
8718938 |
tatttgtgtttatttatgaaacaggtaaaaaagatgataatccatgc |
8718892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 22 - 219
Target Start/End: Complemental strand, 8672838 - 8672644
Alignment:
| Q |
22 |
tagactttgtgtcaccagaaaatgtggatatatgcatgcttttaactgaagagtttcgtcgccttcctaagaatcacagggcaagagaagacaaacttga |
121 |
Q |
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| T |
8672838 |
tagactttgtgtcaccagaaaatgtggatatatgcatgcttttaactg--gagtttcgtcgccttcctaagaatcacatggcaagagaagacaaacttga |
8672741 |
T |
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| Q |
122 |
ggtgattttaatattccctttttgtcttcctttcttttgatgtgaatttcaaactaagaaagttgaaaaggagaacataattgtagacaactttgctt |
219 |
Q |
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| T |
8672740 |
ggtgattttaatattcc-tttttgtcttcctttcttttgatgtgaatttcaaactaagaaagttgaaaaggagaacataattgtagataactttgctt |
8672644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 23 - 237
Target Start/End: Complemental strand, 8591298 - 8591082
Alignment:
| Q |
23 |
agactttgtgtcaccagaaaatgtggatatatgcatgcttttaactgaagagtttcgtcgccttcctaagaatcacagggcaagagaagacaaacttgag |
122 |
Q |
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| T |
8591298 |
agactttgtgtcaccagaaaatgtggatatctgcatgcttttaactgaagagtttcgtcgccttcctaagaatcacagggcaagagaagacaaacttgag |
8591199 |
T |
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| Q |
123 |
gtgattttaatattccctttttgtcttcctttcttttgatgtgaatttcaaactaagaaagttgaaaaggagaacataattgtagacaac---tttgctt |
219 |
Q |
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| T |
8591198 |
gtgattttaataat-cctttttgccttcctttcttttgatgtgaatttcaaactaagaaagttgaaaaggagaacataattgtggacaactaatttgctt |
8591100 |
T |
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| Q |
220 |
aatatttgtgtttattta |
237 |
Q |
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| T |
8591099 |
tgtttttgtgtttattta |
8591082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 267
Target Start/End: Original strand, 23439993 - 23440021
Alignment:
| Q |
239 |
gaaacaggtaaaaaagatgataatccatg |
267 |
Q |
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| T |
23439993 |
gaaacaggtaaaaaagatgataatccatg |
23440021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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