View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18683_low_39 (Length: 287)
Name: NF18683_low_39
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18683_low_39 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 11 - 287
Target Start/End: Original strand, 28169013 - 28169288
Alignment:
| Q |
11 |
cagagagtgatgtccctattacctgtatctttaaatccttgaaatgtctaagccaaccatcttctacaaacactcgatctaaccaaattgatgattcaat |
110 |
Q |
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| T |
28169013 |
cagagagtgatgtccctattacatgtatctttaaatccttgaaatgtctaagccaaccatcttctacaaacacttgatctaaccaaattgatgattcaaa |
28169112 |
T |
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| Q |
111 |
tccataccaagtgaattgtctgtccagcaaacaaatttatgtaagtttcatcatagttatccattcaatgaaattcttcatcgcagatgtaatcccttct |
210 |
Q |
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| T |
28169113 |
tccataccaagtgaattgtct-tccagcaaacaaatttatgtaagtttcaccatagttatccattcaatgaaattcttcatcgcagatgtaatcccttct |
28169211 |
T |
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| Q |
211 |
ttattattctttctttgttcaggttttaaaatttcattaaaatcgccgaacattatcaaaggagatgaggttgactt |
287 |
Q |
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| T |
28169212 |
ttattattctttctttgttcaggttttaaaatttcattaaaatcgccgaacattatcaaaggagatgaggttgactt |
28169288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 199 - 278
Target Start/End: Original strand, 8558671 - 8558750
Alignment:
| Q |
199 |
gtaatcccttctttattattctttctttgttcaggttttaaaatttcattaaaatcgccgaacattatcaaaggagatga |
278 |
Q |
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| T |
8558671 |
gtaatcccttcattattattctttctttgttcgggttttaaaatttcattaaaatcatcgaacattatcaaaggagatga |
8558750 |
T |
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