View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18683_low_41 (Length: 285)
Name: NF18683_low_41
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18683_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 6 - 269
Target Start/End: Original strand, 50264553 - 50264812
Alignment:
| Q |
6 |
agaagcaaaggaatgaatgaaatttatttgggggtgattgggtttgtactttgttggcattacatttattgtttgcttt-atatacacaaaacaaggagt |
104 |
Q |
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| T |
50264553 |
agaaacaaaggaatgaatgaaatttatttgggggtgattgggtttgtactttgtaggcattacatttattgtttgcttttatatacacaaaacaaggagt |
50264652 |
T |
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| Q |
105 |
gggggcaaaagtgatcaatgaatctttacctaccaaagtagaatgttgtaaatgtatcatatcaacgtgaattcacatgtgatggtgggtcattataatt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
50264653 |
gggggcaaaagtgatcaatgaatctttacctaccaaagtagaatgttgtaaatgtatc-----aacgtgaattcacatgtgatggtgggtcattataatt |
50264747 |
T |
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| Q |
205 |
ctcaaatgtgcctccaatttattgagagttcacattcatctaagtggaaaatgtattgtaaatta |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50264748 |
ctcaaatgtgcctccaatttattgagagttcacattcatctaagtggaaaatgtattgtaaatta |
50264812 |
T |
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