View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18683_low_42 (Length: 283)
Name: NF18683_low_42
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18683_low_42 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 283
Target Start/End: Complemental strand, 8938496 - 8938230
Alignment:
| Q |
17 |
tgtgagtcagataagactaaattttccaatttgcaatctatgtctctgacaaggaannnnnnngacactggctttgagggaaattcaaggtattgattct |
116 |
Q |
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| T |
8938496 |
tgtgagtcagataagactaaatttttcaatttgcaatctatgtctctgacaaggaatttttttgacactggctttgagggaaattcaaggtattgattct |
8938397 |
T |
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| Q |
117 |
tgtaacgcgaacaagatagacgaaaggggcattcaacagacgagttatcattgttctggccatttacaaggtttactgatagcagcattagcaatgctaa |
216 |
Q |
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| T |
8938396 |
tgtaacgcgaacaagatagatgaaaggggcattcgacagacgagttatcattgttctggccatttacaaggtttactgatagcagcattagcaatgctaa |
8938297 |
T |
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| Q |
217 |
tattgtgagtgacatgatgaagggaatatgcacagccagctctctgaaatgaagagaatatgcattt |
283 |
Q |
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| T |
8938296 |
tattgtgagtgacatgatgaagggaatatgcatagccagctctctgaaatgaaaagaatatgcattt |
8938230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 8926073 - 8925858
Alignment:
| Q |
17 |
tgtgagtcagataagactaaattttccaatttgcaatctatgtctctgacaaggaannnnnnngacactggctttgagggaaattcaaggtattgattct |
116 |
Q |
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| T |
8926073 |
tgtgggtcagataggactaagtgtttcaatttgcaatctatgtctctgataaggaatttttttgatacaggttttgagggaaactcaaggtattgttgct |
8925974 |
T |
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| Q |
117 |
tgtaacgcgaacaagatagacgaaaggggcattcaacagacgagttatcattgttctggccatttacaaggtttactgatagcagcattagcaatgctaa |
216 |
Q |
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| T |
8925973 |
tgttgcttgaacaagataaacgaaaggggcattcaacggacgagttattattgttctgaccatttacaaggttcattgatagcagcagaagcaatgctaa |
8925874 |
T |
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| Q |
217 |
tattgtgagtgacatg |
232 |
Q |
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| T |
8925873 |
tattgtgagtgacatg |
8925858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 109 - 243
Target Start/End: Complemental strand, 8961344 - 8961210
Alignment:
| Q |
109 |
ttgattcttgtaacgcgaacaagatagacgaaaggggcattcaacagacgagttatcattgttctggccatttacaaggtttactgatagcagcattagc |
208 |
Q |
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| T |
8961344 |
ttgattcttgttatgcgaacaagataaacgaaaggggcattcatcggacgagttatcattgttctgaccattgacaaggttcattgatatcagcagtagc |
8961245 |
T |
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| Q |
209 |
aatgctaatattgtgagtgacatgatgaagggaat |
243 |
Q |
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| T |
8961244 |
aatgctaatattgtgagtgacatgttgaagggaat |
8961210 |
T |
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