View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18683_low_47 (Length: 271)
Name: NF18683_low_47
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18683_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 9946325 - 9946566
Alignment:
| Q |
19 |
attactacctttatacttctttttaagatactcgttatcaaagatttctaaacacattacacccnnnnnnnntgtttcctaaacactcagatttcattag |
118 |
Q |
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| T |
9946325 |
attactacctttatacttctttttaagatactcgttatcaaagatttctaaacacattacacccaaaaaaaatgttccctaaacactcagatttcattag |
9946424 |
T |
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| Q |
119 |
gacgataaagtttaaatataaatatttaaaaaattaacacaacatcaactataatttg-nnnnnnnngtatagaaaatatatctaaagataaattaaagt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
9946425 |
gacgataaagtttaaatataaatatttaaaaaattaacacaacatcaactataatttgaaaaaaaaagtatataaaatatatctaaagataaattaaagt |
9946524 |
T |
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| Q |
218 |
taatccacttaagttggtatactggtgttggtttgagaccta |
259 |
Q |
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| T |
9946525 |
taatccacttaggttggtatactggtgttggtttgagaccta |
9946566 |
T |
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