View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18683_low_49 (Length: 269)
Name: NF18683_low_49
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18683_low_49 |
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| [»] scaffold0110 (2 HSPs) |
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Alignment Details
Target: scaffold0110 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 10551 - 10803
Alignment:
| Q |
1 |
attaaacatcacgtgattaagactgataaatttttt--gtttaagaatgtctcatatgaatactcttattaatttaagtgannnnnnnncctggacatat |
98 |
Q |
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||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
10551 |
attaaacatcacgtgattaagactgataatttttttaagtttaagaatgtctcatatgaatactcttattaatttaagtgattttttttcctggacatat |
10650 |
T |
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| Q |
99 |
gcatgagttttctaactttctttatcatgttacaggtacaaatattcctctattacattaatgtttgtttattctcgtcgtcaatctgaccgtgccaccg |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10651 |
gcatgagttttctaactttctttatcatgttacaggtacaaatattcctctattacattaatgtttgtttattctcgtcgtcaatctgaccgtgccaccg |
10750 |
T |
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| Q |
199 |
ttctaaaacgaaaaatagcctcctcctatgtacccatcgatgtaatttgcaag |
251 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
10751 |
ttctaaaacgaaaaatagcctcctcctatgtacccatagatgtaatttgcaag |
10803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 18288 - 18540
Alignment:
| Q |
1 |
attaaacatcacgtgattaagactgataaatttttt--gtttaagaatgtctcatatgaatactcttattaatttaagtgannnnnnnncctggacatat |
98 |
Q |
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||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
18288 |
attaaacatcacgtgattaagactgataatttttttaagtttaagaatgtctcatatgaatactcttattaatttaagtgattttttttcctggacatat |
18387 |
T |
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| Q |
99 |
gcatgagttttctaactttctttatcatgttacaggtacaaatattcctctattacattaatgtttgtttattctcgtcgtcaatctgaccgtgccaccg |
198 |
Q |
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| T |
18388 |
gcatgagttttctaactttctttatcatgttacaggtacaaatattcctctattacattaatgtttgtttattctcgtcgtcaatctgaccgtgccaccg |
18487 |
T |
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| Q |
199 |
ttctaaaacgaaaaatagcctcctcctatgtacccatcgatgtaatttgcaag |
251 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
18488 |
ttctaaaacgaaaaatagcctcctcctatgtacccatagatgtaatttgcaag |
18540 |
T |
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