View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18683_low_5 (Length: 531)
Name: NF18683_low_5
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18683_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 11 - 513
Target Start/End: Original strand, 5146095 - 5146598
Alignment:
| Q |
11 |
gagtgagaagaaaatggatgtgatgaataatgaaggagtggtaaagaaaaaagattatgttagagggtttagtgaaaagaagatggtggttaatgaaggg |
110 |
Q |
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| T |
5146095 |
gagtgagaagaaaatggatgtgatgaataatgaaggagtggtaaagaaaaaagattatgttagagggtttagtgaaaagaagatggtggttaatgaaggg |
5146194 |
T |
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| Q |
111 |
attaacaagaagaaagattatgttagaagatggagtgagaagaaaatggttactaataatgaaggattagtttctccaagaagtggtggtgattatgatg |
210 |
Q |
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| T |
5146195 |
attaacaaaaagaaagattatgttagaagatggagtgagaagaaaatggttactaataatgaaggattagtttctccaagaagtggtggtgattatgatg |
5146294 |
T |
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| Q |
211 |
atgatgcttccaagaacaagattcaagcaaaacattcacacaagaaaagttggtgatcattgtatgctgttcagaattcagatcactctcttatttttgt |
310 |
Q |
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| T |
5146295 |
atgatgcttccaagaacaagattcaagcaaaacattcacacaagaaaagttggtgatcattgtatgctgttcagaattcagatcactctcttatttttgt |
5146394 |
T |
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| Q |
311 |
ttcttcatgtttgcatttttgttggttaggattagaattttggttgtgtgaaatgtgaatacttgtatannnnnnngaatgaagaagacttgcttgaaaa |
410 |
Q |
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| T |
5146395 |
ttcttcatgtttgcatttttgttggttaggattagaattttggttgtgtgaaatgtgaatacttgtatatttttttgaatgaagaagacttgcttgaaaa |
5146494 |
T |
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| Q |
411 |
gagttgactattcaacctttcttgttacatgttcattgttctcaatgtagatcattgtttt-aattgttgtccataagtgcaattataacttcagtgtag |
509 |
Q |
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| T |
5146495 |
gagttgactattcaacctttcttgttacatgttcattgttcacaatgtagatcattgttttaaattgttgtccataagtgcaattataacttcagtgtag |
5146594 |
T |
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| Q |
510 |
atct |
513 |
Q |
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| T |
5146595 |
atct |
5146598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 4e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 180 - 508
Target Start/End: Original strand, 5389102 - 5389413
Alignment:
| Q |
180 |
gtttctccaagaagtggtggtgattatgatgatgatgcttccaagaacaagattcaagcaaaacattcacacaagaaaagttggtgatcattgtatgctg |
279 |
Q |
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| T |
5389102 |
gtttctccaagaagtggtggtgaatatgatgaag---cttccaagaacaagattcaaacaaaacattcacacaagaaaaattggtgatcattgaatgctg |
5389198 |
T |
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| Q |
280 |
ttcagaattcagatcactctcttatttttgtttcttcatgtttgcatttttgttggttaggattagaattttggttgtgtgaaatgtgaatacttgtata |
379 |
Q |
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| T |
5389199 |
ttcaga-------tcactcccttatttttgtttcttcttctttttctttttctttttcatgttt-gaatttcggttgtgtgaaatgtgaatacttgtata |
5389290 |
T |
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| Q |
380 |
nnnnnnngaatgaagaagacttgcttgaaaagagttgactattcaacctttcttgttacatgttcattgttctcaatgtagatcattgttt-taattgtt |
478 |
Q |
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| T |
5389291 |
tttttttgaa-------gacttgcttgaaaagagttgactattcaacctttcttgttacatgatcagtgttctcaatgtagatcattgtttcaaattgtt |
5389383 |
T |
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| Q |
479 |
gtccataagtgcaattataacttcagtgta |
508 |
Q |
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| T |
5389384 |
gtccacaagtgcaattataacttcaatgta |
5389413 |
T |
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