View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18683_low_51 (Length: 260)
Name: NF18683_low_51
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18683_low_51 |
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| [»] scaffold0064 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 7328286 - 7328533
Alignment:
| Q |
1 |
actcgtggttgaaattaaaggcattgcatctttctgaagatggtgatacaatcgtattcgcaagctgcctacataaccaagcaattctctataacttgag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7328286 |
actcgtggttgaaattaaaggcattgcatctttctgaagatggtgatacaatcgtattcgcaagctgcctgcataaccaagcaattctctataacttgag |
7328385 |
T |
|
| Q |
101 |
aactaatagactactggaatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagtctggtttcaacctgctgaatgtaagtt |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7328386 |
aactaatagagtactggaatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagtctggtttcaacctgctgaaagtaagtt |
7328485 |
T |
|
| Q |
201 |
tttctccaacataatatttatttcaatttatgtacttagttttgcctt |
248 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7328486 |
tttctccaacataatatttatttcaatttatgtacttagttttgcctt |
7328533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 7306603 - 7306378
Alignment:
| Q |
18 |
aaggcattgcatctttctgaagatggtgatacaatcgtattcgcaagctgcctacataaccaagcaattctctataacttgagaactaatagactactgg |
117 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
7306603 |
aaggcattgcatctttctgaagatggtgatacaatcgtattcgcaagctgcctagataaccaagcaattctgtataacttgagaactaatagagtactga |
7306504 |
T |
|
| Q |
118 |
aatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagtctggtttcaacctgctgaatgtaagtttttctccaacataatat |
217 |
Q |
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|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||| ||| |||||||||||||||||||| |
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| T |
7306503 |
aatctagagtcaacaaaaagatatgttggttctctatcaaggattatgtcgaaagtctggtctcaacctattgaacgtaggtttttctccaacataatat |
7306404 |
T |
|
| Q |
218 |
ttatttcaatttatgtacttagtttt |
243 |
Q |
| |
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|||||||||||||||||||| ||||| |
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| T |
7306403 |
ttatttcaatttatgtacttggtttt |
7306378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 7311172 - 7310936
Alignment:
| Q |
1 |
actcgtggttgaaattaaaggcattgcatctttctgaagatggtgatacaatcgtattcgcaagctgcctacataaccaagcaattctctataacttgag |
100 |
Q |
| |
|
||||| |||||||||||||| | ||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||| ||||||||||| |
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| T |
7311172 |
actcgaggttgaaattaaagccgttgcatctttctgaagatggtgatacaatagtattcggaagctgcctagataaccaagcaattctgtataacttgag |
7311073 |
T |
|
| Q |
101 |
aactaatagactactggaatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagtctggtttcaacctgctgaatgtaagtt |
200 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
7311072 |
aactaatagagtactgaaatctagagttaacaaaaagatatgttggttctctatcaaggattatgtcgaaagtctggtttcaacctattgaaagtaagtt |
7310973 |
T |
|
| Q |
201 |
tttctccaacataatatttatttcaatttatgtactt |
237 |
Q |
| |
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||| || |||||||||||||||||| ||||||||||| |
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| T |
7310972 |
tttttctaacataatatttatttcagtttatgtactt |
7310936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 206
Target Start/End: Complemental strand, 35205863 - 35205658
Alignment:
| Q |
9 |
ttgaaattaaaggcattgcatctttctgaagatggtgatacaatcgtattcgca---agctgcctacataaccaagcaatt-----ctctataacttgag |
100 |
Q |
| |
|
|||| ||||| | |||||||||||||||| |||||||||||| ||||||||||| | | |||| | |||||| |||| |||||||||| ||| |
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|
| T |
35205863 |
ttgatattaatgccattgcatctttctgaggatggtgatacactcgtattcgcagcaaacaacctaaaacaccaagtaattatattctctataactggag |
35205764 |
T |
|
| Q |
101 |
aactaatagactactggaatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagtctggtttcaacctgctgaatgtaagtt |
200 |
Q |
| |
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||| |||||| ||||| ||||| | ||||||| ||||||||||||| | |||||||||||||||||||||| ||||||||||| | |||||||||||| |
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| T |
35205763 |
aaccaatagagtactgaaatcttcaattaacaataagatatgttggttcactatcaaggattatgtcgaaagcctggtttcaactagttgaatgtaagtt |
35205664 |
T |
|
| Q |
201 |
tttctc |
206 |
Q |
| |
|
||||| |
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|
| T |
35205663 |
gttctc |
35205658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 184
Target Start/End: Original strand, 20414999 - 20415161
Alignment:
| Q |
22 |
cattgcatctttctgaagatggtgatacaatcgtattcgcaagctgcctacataaccaagcaattctctataacttgagaactaatagactactggaatc |
121 |
Q |
| |
|
|||||||||||| || ||||||||||| | |||||||||| | ||||||| ||| ||||||||||||||| | ||||| ||||| | || || || | |
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| T |
20414999 |
cattgcatcttttcaaaaatggtgatacacttgtattcgcaaacagcctacaagaccgagcaattctctataattggagaaataatatagtattgaaacc |
20415098 |
T |
|
| Q |
122 |
tagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagtctggtttcaac |
184 |
Q |
| |
|
||||||||||| || | |||||||| ||||||||| |||||| ||||||||||||||||| |
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|
| T |
20415099 |
cagagttaacaataacaaatgttggttctctatcaactgttatgttgaaagtctggtttcaac |
20415161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 183
Target Start/End: Complemental strand, 21210420 - 21210247
Alignment:
| Q |
9 |
ttgaaattaaaggcattgcatctttctgaagatggtgatacaatcgtattcgcaagctgcctacataaccaagcaattctctataacttgagaactaata |
108 |
Q |
| |
|
|||||||||||| | |||||||||||||| || ||||||||| ||||||| || | ||| || ||||||||| |||| |||||||| |||| ||||| |
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| T |
21210420 |
ttgaaattaaagccggtgcatctttctgaaaatattgatacaatagtattcgtaaacaacctgcaaaaccaagcagttctatataacttcagaaataata |
21210321 |
T |
|
| Q |
109 |
gactactggaatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagtctggtttcaa |
183 |
Q |
| |
|
| ||||| |||| | | ||||| | |||||| |||||| || || | |||||||||||| |||||||||||||| |
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|
| T |
21210320 |
cagtactgaaatccaaaattaaccataagatacgttggttctgtaccgaggattatgtcg-aagtctggtttcaa |
21210247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 205
Target Start/End: Complemental strand, 21218553 - 21218469
Alignment:
| Q |
121 |
ctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagtctggtttcaacctgctgaatgtaagtttttct |
205 |
Q |
| |
|
||||| |||||||||||||| |||||| ||| || | |||||||||||||| |||||||||| | |||| ||||||| |||| |
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|
| T |
21218553 |
ctagaattaacaaaaagataagttggtcctcagtctatgattatgtcgaaagcttggtttcaacttcttgaaagtaagttcttct |
21218469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 81 - 206
Target Start/End: Complemental strand, 31442874 - 31442749
Alignment:
| Q |
81 |
gcaattctctataacttgagaactaatagactactggaatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagtctggttt |
180 |
Q |
| |
|
|||||||||||||| | ||||| ||||||| || || || ||||||||||||||||||||||||||| |||||| || ||||||||||||| |||||| |
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|
| T |
31442874 |
gcaattctctataattggagaaataatagagtagtgaaaactagagttaacaaaaagatatgttggttctctataaaccattatgtcgaaagcttggttt |
31442775 |
T |
|
| Q |
181 |
caacctgctgaatgtaagtttttctc |
206 |
Q |
| |
|
|||| | |||| ||||||| ||||| |
|
|
| T |
31442774 |
caacaagttgaaagtaagttcttctc |
31442749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 206
Target Start/End: Original strand, 24360 - 24491
Alignment:
| Q |
75 |
aaccaagcaattctctataacttgagaactaatagactactggaatctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagtc |
174 |
Q |
| |
|
|||| ||||||||||||||| | || || ||||||| || || || |||| |||||||||||||||||||||| ||||| || ||||||| ||||| |
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|
| T |
24360 |
aaccgagcaattctctataattggataaataatagagtagtgaaaactagggttaacaaaaagatatgttggtgatctataaacaattatgttgaaagca |
24459 |
T |
|
| Q |
175 |
tggtttcaacctgctgaatgtaagtttttctc |
206 |
Q |
| |
|
||||| |||| || ||| ||||||| ||||| |
|
|
| T |
24460 |
tggttccaacttgttgagagtaagttcttctc |
24491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 205
Target Start/End: Original strand, 42298342 - 42298420
Alignment:
| Q |
127 |
ttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagtctggtttcaacctgctgaatgtaagtttttct |
205 |
Q |
| |
|
|||||| |||||||||||||| ||| || || |||||||||||||| |||||||||| | |||| ||||||| |||| |
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|
| T |
42298342 |
ttaacagaaagatatgttggtcctcaatgaaagattatgtcgaaagcttggtttcaacttcttgaaagtaagttcttct |
42298420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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