View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18683_low_53 (Length: 255)
Name: NF18683_low_53
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18683_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 32765649 - 32765411
Alignment:
| Q |
1 |
ttaaaatatattttgggttgatttacttcgtcttccatcgataaaggtgaaaaagtttggtcaatttgagaagaaaagatacagaagtgggtgaattcca |
100 |
Q |
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| T |
32765649 |
ttaaaatatattttgggttgatttacttcatcttccatcgataaaggtgaaaaagtttggtcaatttgagaagaaaagatacagaagtgggtgaattcca |
32765550 |
T |
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| Q |
101 |
ttaatacgtctaattgttgaccatggtttgatgtattataaatacccgtggtttgtgcctagttttgaaactaaatctgattttcataatgccatttctt |
200 |
Q |
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| T |
32765549 |
ttaatacgtctaattgttgaccatggtttgatgtattataaatacccatggtttgtgcctagttttgaaactaaatctgattttcataatgccatttctt |
32765450 |
T |
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| Q |
201 |
atttattacaacgacactgtttcctgatttaattaatta |
239 |
Q |
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| T |
32765449 |
atttattacaacgacactgtttcctgatttaattaatta |
32765411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 32754886 - 32754829
Alignment:
| Q |
109 |
tctaattgttgaccatggtttgatgtattataaatacccgtggtttgtgcctagtttt |
166 |
Q |
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|||||||||||| |||| ||||||||||||||||||||| |||| ||||||||||| |
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| T |
32754886 |
tctaattgttgatcatgatttgatgtattataaataccctcagtttatgcctagtttt |
32754829 |
T |
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