View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18683_low_59 (Length: 238)

Name: NF18683_low_59
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18683_low_59
NF18683_low_59
[»] chr7 (9 HSPs)
chr7 (1-221)||(7327982-7328202)
chr7 (1-180)||(7311256-7311435)
chr7 (1-76)||(35205970-35206045)
chr7 (3-72)||(21210529-21210598)
chr7 (109-165)||(20456359-20456415)
chr7 (10-81)||(22473213-22473284)
chr7 (6-53)||(36260225-36260272)
chr7 (12-78)||(21218765-21218831)
chr7 (116-169)||(36260106-36260159)
[»] scaffold0128 (3 HSPs)
scaffold0128 (10-81)||(25562-25633)
scaffold0128 (10-81)||(8513-8584)
scaffold0128 (1-45)||(4117-4161)


Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 7328202 - 7327982
Alignment:
Q  1 tctgtcatcttccatataacaaaatctgttttgttgaaatcatgagaaaagcataaggagttcatcaacacacaaacatttgatgaatgtgtcgactcct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7328202 tctgtcatcttccatataacaaaatctgttttgttgaaatcatgagaaaagcataaggagttcatcaacacacaaacatttgatgaatgtgtcgactcct 7328103  T
Q  101 cagcaccaggagggagcatcaactttgtgtatgtctcggtccctagatgtagtgaaacaatcacaaattcattaataatactagcagtattggtaggaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7328102 cagcaccaggagggagcatcaactttgtgtatgtctcggtccctagatgtagtgaaacaatcacaaattcattaataatactagcagtattggtaggaat 7328003  T
Q  201 ccgattgcgtgccaaccagtt 221  Q
    |||||||||||||||||||||    
T  7328002 ccgattgcgtgccaaccagtt 7327982  T

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Target: chr7; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 7311256 - 7311435
Alignment:
Q  1 tctgtcatcttccatataacaaaatctgttttgttgaaatcatgagaaaagcataaggagttcatcaacacacaaacatttgatgaatgtgtcgactcct 100  Q
    ||||||||||||||||||||||||||||||  ||||||||| ||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||  |    
T  7311256 tctgtcatcttccatataacaaaatctgttccgttgaaatcttgagaaaagcagaaggagttcatcaacacacaaacacttgataaatgtgtcgacttgt 7311355  T
Q  101 cagcaccaggagggagcatcaactttgtgtatgtctcggtccctagatgtagtgaaacaatcacaaattcattaataata 180  Q
    ||||||  ||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||| |||||||    
T  7311356 cagcacttggagggagcatcaactttgtgtatgtctcagtccctatatgtagtgaaataatcacaaattcataaataata 7311435  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 35205970 - 35206045
Alignment:
Q  1 tctgtcatcttccatataacaaaatctgttttgttgaaatcatgagaaaagcataaggagttcatcaacacacaaa 76  Q
    |||||||||||||||||||||||||| |||   |||||||||||| |||| || ||||||||| ||| ||||||||    
T  35205970 tctgtcatcttccatataacaaaatcagttccattgaaatcatgataaaaacaaaaggagttcctcagcacacaaa 35206045  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 21210529 - 21210598
Alignment:
Q  3 tgtcatcttccatataacaaaatctgttttgttgaaatcatgagaaaagcataaggagttcatcaacaca 72  Q
    |||||||||||||||||||||||| |||  ||||||||||||| ||| ||||||| ||||| | ||||||    
T  21210529 tgtcatcttccatataacaaaatcagttccgttgaaatcatgataaaggcataagaagttcctaaacaca 21210598  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 20456415 - 20456359
Alignment:
Q  109 ggagggagcatcaactttgtgtatgtctcggtccctagatgtagtgaaacaatcaca 165  Q
    |||||| |||||||||||||||||||||| || |||||||  || ||||||||||||    
T  20456415 ggagggggcatcaactttgtgtatgtctcagtacctagatcaagggaaacaatcaca 20456359  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 81
Target Start/End: Original strand, 22473213 - 22473284
Alignment:
Q  10 ttccatataacaaaatctgttttgttgaaatcatgagaaaagcataaggagttcatcaacacacaaacattt 81  Q
    ||||||||||||||||| ||||  || ||||||||| |||  || | |||||||||||| ||||||||||||    
T  22473213 ttccatataacaaaatcagtttcttttaaatcatgataaacacacagggagttcatcaatacacaaacattt 22473284  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 36260272 - 36260225
Alignment:
Q  6 catcttccatataacaaaatctgttttgttgaaatcatgagaaaagca 53  Q
    ||||||||||||||||||||| ||||| ||| |||||| |||||||||    
T  36260272 catcttccatataacaaaatcagttttcttgtaatcattagaaaagca 36260225  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 21218765 - 21218831
Alignment:
Q  12 ccatataacaaaatctgttttgttgaaatcatgagaaaagcataaggagttcatcaacacacaaaca 78  Q
    ||||||||| ||||| |||   |||||||| ||| |||| || ||||||||||||||||||||||||    
T  21218765 ccatataaccaaatcagttccattgaaatcgtgataaaaacaaaaggagttcatcaacacacaaaca 21218831  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 36260159 - 36260106
Alignment:
Q  116 gcatcaactttgtgtatgtctcggtccctagatgtagtgaaacaatcacaaatt 169  Q
    |||||||||||||||||||||| ||  | ||||  |||||||||||||||||||    
T  36260159 gcatcaactttgtgtatgtctctgtttccagatcaagtgaaacaatcacaaatt 36260106  T

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Target: scaffold0128 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 81
Target Start/End: Complemental strand, 25633 - 25562
Alignment:
Q  10 ttccatataacaaaatctgttttgttgaaatcatgagaaaagcataaggagttcatcaacacacaaacattt 81  Q
    ||||||||||||||||| ||||  || ||||| ||| |||  |||| |||||||||||||||||||||||||    
T  25633 ttccatataacaaaatcagtttcctttaaatcgtgataaacacatagggagttcatcaacacacaaacattt 25562  T

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Target: scaffold0128; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 81
Target Start/End: Complemental strand, 8584 - 8513
Alignment:
Q  10 ttccatataacaaaatctgttttgttgaaatcatgagaaaagcataaggagttcatcaacacacaaacattt 81  Q
    ||||||||||||||||| ||||  || ||||| ||| |||  |||| ||||||||| |||||||||||||||    
T  8584 ttccatataacaaaatcagtttcctttaaatcttgataaacacatagggagttcattaacacacaaacattt 8513  T

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Target: scaffold0128; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 4161 - 4117
Alignment:
Q  1 tctgtcatcttccatataacaaaatctgttttgttgaaatcatga 45  Q
    |||||||||||||||||||| ||||| || || ||||||||||||    
T  4161 tctgtcatcttccatataaccaaatcggtcttcttgaaatcatga 4117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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