View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18683_low_6 (Length: 526)
Name: NF18683_low_6
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18683_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 147 - 520
Target Start/End: Original strand, 10306411 - 10306775
Alignment:
| Q |
147 |
tctcattccaccatcacttctctctctctaacctctttcgtttttctctccatggattcagtattctccaccattctcatcattctcgctattctcttca |
246 |
Q |
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| T |
10306411 |
tctcattccaccatcacttctctctctctaacctctttcgtttttctctccatggattcagtattctccaccattctcatcattctcgctattctcttca |
10306510 |
T |
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| Q |
247 |
tcaccttcatgctttcactcatgctccgtttccttcaaatccgcataaatcgccgacgtctcctctccgattcaacaccaccgcgatcaccacaaccacc |
346 |
Q |
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| T |
10306511 |
tcaccttcatgctttcactcatgctccgtttccttcaactccgcataaatcgccgacgtctcctctccgattcaacaccaccgcgatcacca-------- |
10306602 |
T |
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| Q |
347 |
gccaccattgacgatgattgttactgagtcgcctccagcttcactaaacatcgactcactccctccgattcctttccatttcacctccgattcaacacca |
446 |
Q |
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| T |
10306603 |
-ccaccattgacgacgattgttactgagtcgcctccagcttcactaaacatcgactcactccctccgattccgttccatttcacctccgattcaacacca |
10306701 |
T |
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| Q |
447 |
ccgccgtcgcaaccacctccaccggcgcgggaaatacaacgagcaatcgattcacttcctacgtttcatctctc |
520 |
Q |
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| T |
10306702 |
ccgtcgtcgcaaccacctcaacctgcgccggaaatacaacgagcaatcgattcacttcctacgtttcatttctc |
10306775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 10306307 - 10306414
Alignment:
| Q |
15 |
accaaccacacgcatgaggcaaagg-tgacttatatatttctgttacaacttagaacaatgcaacactgtcattgcaaaacaacaacactcactatgtat |
113 |
Q |
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||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10306307 |
accaaccacacgcatgaggcaaagggtgactcatat--ttctgttacaacttagaacaatgcaacactgtcattgcaaaacaacaacactcactatgtat |
10306404 |
T |
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| Q |
114 |
cactgttctc |
123 |
Q |
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| T |
10306405 |
cattgttctc |
10306414 |
T |
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