View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18683_low_61 (Length: 235)
Name: NF18683_low_61
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18683_low_61 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 35639208 - 35639428
Alignment:
| Q |
1 |
agaccgacgatgggcatgataaagtgcaacattgaagcctccattttgaacaacaactatatattggggtataatatgtgttttaaaggctctttggggt |
100 |
Q |
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| T |
35639208 |
agaccgacgataggcatgataaagtgcaacattgaagcctccattttgaacaacaactatatattggggtataatatgtgttttaaaggctctttggggt |
35639307 |
T |
|
| Q |
101 |
tgttcttacttggcaaatcaaattatatatgcacttcccttccaccattttagaattaaaaggtaaagccattagcttgcttgaatatatcaaagtggtc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
35639308 |
tgttcttacttggcaaatcaaattatatatgcacttcccttccaccattttagcattaaaaggtaaagccattagcttgcttgaatatatcaaagtgatc |
35639407 |
T |
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| Q |
201 |
atatggaacggaatgcatgct |
221 |
Q |
| |
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||||||||| |||| |||||| |
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| T |
35639408 |
atatggaacagaatacatgct |
35639428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 35601806 - 35601586
Alignment:
| Q |
1 |
agaccgacgatgggcatgataaagtgcaacattgaagcctccattttgaacaacaactatatattggggtataatatgtgttttaaaggctctttggggt |
100 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
35601806 |
agaccgacgataggcatgataaagtgcaacattgaagcctccgttttgaacaacaactatatattggggtataatatgtgttttaaaggctctttgaggt |
35601707 |
T |
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| Q |
101 |
tgttcttacttggcaaatcaaattatatatgcacttcccttccaccattttagaattaaaaggtaaagccattagcttgcttgaatatatcaaagtggtc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35601706 |
tgttcttacttggcaaatcaaattatatatgcacttcccttccaccattttagcattaaaaggtaaagccattagcttgcttgaatatatcaaagtggtc |
35601607 |
T |
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| Q |
201 |
atatggaacggaatgcatgct |
221 |
Q |
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||||||||| |||| |||||| |
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| T |
35601606 |
atatggaacagaatacatgct |
35601586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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