View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18683_low_66 (Length: 227)
Name: NF18683_low_66
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18683_low_66 |
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| [»] scaffold0320 (1 HSPs) |
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| [»] scaffold0442 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 7054362 - 7054483
Alignment:
| Q |
16 |
atactactacttccctctttgattcaagaaacctagcattcttcaatacataaatcaaaattgttaaatatagagttcaccgtcaaagtgtaagatgtgt |
115 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7054362 |
atactactacttccctctttgattcaaaaaacctagcattcttcaatacatgaatcaaaattgttaaatatagagttcaccatcaaagtgtaagatgtgt |
7054461 |
T |
|
| Q |
116 |
tcatcat-tcaattgacaccac |
136 |
Q |
| |
|
||||||| |||||||||||||| |
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| T |
7054462 |
tcatcatctcaattgacaccac |
7054483 |
T |
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Target: scaffold0320 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0320
Description:
Target: scaffold0320; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 13774 - 13653
Alignment:
| Q |
16 |
atactactacttccctctttgattcaagaaacctagcattcttcaatacataaatcaaaattgttaaatatagagttcaccgtcaaagtgtaagatgtgt |
115 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
13774 |
atactactacttccctctttgattcaaaaaacctagcattcttcaatacatgaatcaaaattgttaaatataaagttcaccatcaaagtgtaagatgtgt |
13675 |
T |
|
| Q |
116 |
tcatcat-tcaattgacaccac |
136 |
Q |
| |
|
||||||| |||||||||||||| |
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|
| T |
13674 |
tcatcatctcaattgacaccac |
13653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 8212551 - 8212430
Alignment:
| Q |
16 |
atactactacttccctctttgattcaagaaacctagcattcttcaatacataaatcaaaattgttaaatatagagttcaccgtcaaagtgtaagatgtgt |
115 |
Q |
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||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8212551 |
atactactacttccctctttgattcaaaaaacctagcattattcaatacatgaatcaaaattgttaaatatagagttcaccatcaaagtgtaagatgtgt |
8212452 |
T |
|
| Q |
116 |
tcatcat-tcaattgacaccac |
136 |
Q |
| |
|
||||||| |||||||||||||| |
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| T |
8212451 |
tcatcatctcaattgacaccac |
8212430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 9290812 - 9290691
Alignment:
| Q |
16 |
atactactacttccctctttgattcaagaaacctagcattcttcaatacataaatcaaaattgttaaatatagagttcaccgtcaaagtgtaagatgtgt |
115 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||| |
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| T |
9290812 |
atactactacttccctctttgattcaaaaaacctagcattcttcaatacatgaatcaaaattgctaaatatagagttcaccatcaaagtgtaatatgtgt |
9290713 |
T |
|
| Q |
116 |
tcatcat-tcaattgacaccac |
136 |
Q |
| |
|
||||||| |||||||||||||| |
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|
| T |
9290712 |
tcatcatctcaattgacaccac |
9290691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 38981118 - 38980997
Alignment:
| Q |
16 |
atactactacttccctctttgattcaagaaacctagcattcttcaatacataaatcaaaattgttaaatatagagttcaccgtcaaagtgtaagatgtgt |
115 |
Q |
| |
|
||||||| |||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38981118 |
atactaccacttccctctttcattcaaaaaacctagcattcttcaatacatgaatcaaaattgttaaatatagagttcaccatcaaagtgtaagatgtgt |
38981019 |
T |
|
| Q |
116 |
tcatcat-tcaattgacaccac |
136 |
Q |
| |
|
||||||| |||||||||||||| |
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| T |
38981018 |
tcatcatctcaattgacaccac |
38980997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 24867241 - 24867362
Alignment:
| Q |
16 |
atactactacttccctctttgattcaagaaacctagcattcttcaatacataaatcaaaattgttaaatatagagttcaccgtcaaagtgtaagatgtgt |
115 |
Q |
| |
|
|||||| ||||||| |||||||||||||| ||||| | ||||||||||||||||| ||||| |||||||||| |||||||| ||||| ||||||| |||| |
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| T |
24867241 |
atactattacttccttctttgattcaagagacctatcgttcttcaatacataaataaaaatagttaaatataaagttcaccatcaaaatgtaagacgtgt |
24867340 |
T |
|
| Q |
116 |
tcatcat-tcaattgacaccac |
136 |
Q |
| |
|
||||| | |||||||||||||| |
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|
| T |
24867341 |
tcatcgtctcaattgacaccac |
24867362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0442
Description:
Target: scaffold0442; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 12205 - 12326
Alignment:
| Q |
16 |
atactactacttccctctttgattcaagaaacctagcattcttcaatacataaatcaaaattgttaaatatagagttcaccgtcaaagtgtaagatgtgt |
115 |
Q |
| |
|
|||||||||||||||| ||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
12205 |
atactactacttccctatttgattgaaaaaacctagcattcttcaatacatgaatcaaaattgttaaatatagagttcaccatcagagtgtaagatgtgt |
12304 |
T |
|
| Q |
116 |
tcatcat-tcaattgacaccac |
136 |
Q |
| |
|
||||||| |||||||||||||| |
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|
| T |
12305 |
tcatcatctcaattgacaccac |
12326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 38 - 158
Target Start/End: Complemental strand, 24999573 - 24999455
Alignment:
| Q |
38 |
ttcaagaaacctagcattcttcaatacataaatcaaaattgttaaatatagagttcaccgtcaaagtgtaagatgtgttcatcat-tcaattgacaccac |
136 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||| |
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| T |
24999573 |
ttcaagaaacctagcactcttcaatacagaaatcaaaattgttaaatatagagttcatcgtcaaagtgtaagatgtgttcatcatctcaattga---cac |
24999477 |
T |
|
| Q |
137 |
cacactctcaatcaatgtccac |
158 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
24999476 |
cacactctcaatcaatgtccac |
24999455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 2665160 - 2665099
Alignment:
| Q |
26 |
ttccctctttgattcaagaaacctagca-ttcttcaatacataaatcaaaattgttaaatata |
87 |
Q |
| |
|
|||||| ||||||||||||||| | ||| |||||| |||||||||||||||||||| |||||| |
|
|
| T |
2665160 |
ttccctttttgattcaagaaacat-gcagttcttcgatacataaatcaaaattgtttaatata |
2665099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 30894275 - 30894223
Alignment:
| Q |
23 |
tacttccctctttgattcaagaaacctagcattcttcaatacataaatcaaaa |
75 |
Q |
| |
|
||||| ||||||||| |||||||||||| |||| ||||||||||||| |||| |
|
|
| T |
30894275 |
tactttcctctttgactcaagaaacctacaattcatcaatacataaataaaaa |
30894223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 51425001 - 51424883
Alignment:
| Q |
19 |
ctactacttccctctttgattcaagaaacctagcattcttcaatacataaatcaaaattgttaaatatagagttcaccgtcaaagtgtaagatgtgttca |
118 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||| ||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
51425001 |
ctactacttccctctttgattcaaaaaacctagcattcttcaattcatgaatcaaacttgttaaatatagagttcaccatcaaagtgtaagatgcgttca |
51424902 |
T |
|
| Q |
119 |
tcat-tcaattgacaccac |
136 |
Q |
| |
|
|| | |||||||||||||| |
|
|
| T |
51424901 |
tcgtctcaattgacaccac |
51424883 |
T |
|
Back To:
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