View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18683_low_70 (Length: 216)
Name: NF18683_low_70
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18683_low_70 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 5e-92; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 48470177 - 48469995
Alignment:
| Q |
18 |
acaattgggtcctttcaacggcaggtaaattttttgtaccctctttgaattgtttttcacttctaaatatttgacctgaaaatatgacacaattggctga |
117 |
Q |
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| T |
48470177 |
acaattgggtcctttcaacggcaggtaaatttcttgtaccctctttgaattgtttttcagttctaaatatttgacctgaaaatatgacacaattggctga |
48470078 |
T |
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| Q |
118 |
ttctgaaatgctaaagatattttggttatgacttatagttacaagtaaggttcattgtaatcttttaaattggacagtagtat |
200 |
Q |
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| T |
48470077 |
ttctgaaatgctaaagatattttggttatgactcatagttacaagtaaggttcattgtaatcttttaaattggacagtagtat |
48469995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 48478539 - 48478365
Alignment:
| Q |
18 |
acaattgggtcctttcaacggcaggtaaattttttgtaccctctttgaattgtttttcacttctaaatatttgacctgaaaatatgacacaattggctga |
117 |
Q |
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|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
48478539 |
acaattgggtcctttcaacggcaggtgaatttgttgtaccctctttgaattgtttttcaattctaaatatttgacctgaaaatatgacacaattgactga |
48478440 |
T |
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| Q |
118 |
ttctgaaatgctaaagatattttggttatgacttatagttacaagtaaggttcattgtaatcttttaaattggac |
192 |
Q |
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| T |
48478439 |
ttctgaaatgctaaagatattttggttatgactcatagttacaagtaaggttcattgtaatcttttacattggac |
48478365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 48883740 - 48883794
Alignment:
| Q |
146 |
tgacttatagttacaagtaaggttcattgtaatcttttaaattggacagtagtat |
200 |
Q |
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| T |
48883740 |
tgactcatagttacaagtaatgttcattgtaatcttttaaattggactgtagtat |
48883794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 181
Target Start/End: Complemental strand, 48486945 - 48486834
Alignment:
| Q |
70 |
tttttcacttctaaatatttgacctgaaaatatgacacaattggctgattctgaaatgctaaagatattttggttatgacttatagttacaagtaaggtt |
169 |
Q |
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||||||| ||| ||||||||||| || || |||||| ||||| ||||| | ||||||||||||||| |||| |||||||| ||| ||| |||| ||| |
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| T |
48486945 |
tttttcaattcaaaatatttgacttgtaattatgacttaattgattgatttttaaatgctaaagatatgttgggtatgacttgtagatactagtactgtt |
48486846 |
T |
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| Q |
170 |
cattgtaatctt |
181 |
Q |
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| T |
48486845 |
gattgtaatctt |
48486834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 38817076 - 38817244
Alignment:
| Q |
18 |
acaattgggtcctttcaacggcaggtaaattttttgtaccctctttgaattgtttttcacttctaaatatttgacctgaaaatatgacacaattggctga |
117 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||| | ||||||||||||||||||| || |||| |
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| T |
38817076 |
acaattgggtcctttcaacggcaggtaaatttgttgtaccctctttgaattgtttttcaatt-taaatatctaacctgaaaatatgacacaactgactga |
38817174 |
T |
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| Q |
118 |
ttctgaaatgctaaagatattttggttatgacttatagttacaagtaaggttcattgtaatcttttaaatt |
188 |
Q |
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|| |||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
38817175 |
ttttgaaatgctaaagata-tttggttatgactcatagttacaattaaggttcattgtaatcttttaaatt |
38817244 |
T |
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