View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18683_low_8 (Length: 501)
Name: NF18683_low_8
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18683_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 265 - 486
Target Start/End: Complemental strand, 11088405 - 11088184
Alignment:
| Q |
265 |
caatttcaaattccgggctcctccccatcttcacctctttttccctcaactctttaccactaatccattgaaacaaatgccaactatgtctaccacaaca |
364 |
Q |
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| T |
11088405 |
caatttcaaattccgggctcctccccatcttcacctcttttttcctcgactctttaccactaatccattgaaacaaatgtcaactatgtctaccacaaca |
11088306 |
T |
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| Q |
365 |
tatcacaattggttattcctcaattccaccatcctcccttaaaaccacgtcaacagaaactataaatctctaatcctaccaccatacgccatatatatta |
464 |
Q |
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| T |
11088305 |
tatcacaattggttattcctcaattccaccatcctcccttaaaaccacgtcaacagaaactataaatctctaatcctaccaccatacgtcatatatatta |
11088206 |
T |
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| Q |
465 |
cgataaccacactcctcttcat |
486 |
Q |
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|||||| ||||||||||||||| |
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| T |
11088205 |
cgataatcacactcctcttcat |
11088184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 11088780 - 11088535
Alignment:
| Q |
1 |
tgatggaaccattcatgtctacagaggaactgaatgtgaatcaatagaacaaggagttgataaatgtggtccatgactatagactttg----gaaacaac |
96 |
Q |
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| T |
11088780 |
tgatggaaccattcatgtctatagaggaactgaatgtgaatcaatagaacaaagagttgataaacgtggtccatgactatagagtttggaaagaaacaac |
11088681 |
T |
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| Q |
97 |
ttcaaaaaatcattcagatcagtttcatttgatgatgaatgat---ttaattgataataatgaatcatgagaaaaaattatcgtatcatatca---tact |
190 |
Q |
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| T |
11088680 |
ttcaaaaaatcattcagatcagtgtcatttgatgatgaatgatttattaattgataataatgaatcaagagaaaaatttatcatatcatatcatagtact |
11088581 |
T |
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| Q |
191 |
tcgcaaagttcggggttcaaatcccaactaccacgaaaaaattatc |
236 |
Q |
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| T |
11088580 |
ttgcaaagtctggggttcaaatcccgaccaccacgaaaaaattatc |
11088535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 361 - 484
Target Start/End: Original strand, 24508674 - 24508797
Alignment:
| Q |
361 |
aacatatcacaattgg-ttattcctcaattccaccatcc-tcccttaaaaccacgtcaacagaaactataaatctctaatcctaccaccatacgccatat |
458 |
Q |
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|||||||||||||||| |||||||||||||||| ||||| | | ||||||| | |||||| |||||||||||| |||| |||||||||||| || | |
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| T |
24508674 |
aacatatcacaattggattattcctcaattccatcatcccttctttaaaactaattcaacataaactataaatcattaattctaccaccatacacc--ac |
24508771 |
T |
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| Q |
459 |
atattacgataaccacactcctcttc |
484 |
Q |
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| T |
24508772 |
atattacgataactacactcctcttc |
24508797 |
T |
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