View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18683_low_9 (Length: 485)

Name: NF18683_low_9
Description: NF18683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18683_low_9
NF18683_low_9
[»] chr3 (18 HSPs)
chr3 (18-465)||(749632-750093)
chr3 (27-465)||(675036-675485)
chr3 (142-465)||(2634006-2634332)
chr3 (267-463)||(2495705-2495906)
chr3 (376-465)||(9564385-9564474)
chr3 (314-449)||(2504152-2504286)
chr3 (267-438)||(7331830-7332004)
chr3 (29-172)||(2485112-2485259)
chr3 (352-425)||(2447037-2447109)
chr3 (119-203)||(2495517-2495597)
chr3 (386-448)||(2641571-2641633)
chr3 (386-448)||(2649064-2649126)
chr3 (112-186)||(2641879-2641951)
chr3 (112-186)||(2649372-2649444)
chr3 (389-447)||(2485414-2485472)
chr3 (22-56)||(7332267-7332301)
chr3 (225-266)||(7332018-7332059)
chr3 (114-155)||(7332157-7332198)
[»] scaffold0019 (2 HSPs)
scaffold0019 (199-465)||(2296-2572)
scaffold0019 (18-203)||(2081-2270)


Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 18 - 465
Target Start/End: Complemental strand, 750093 - 749632
Alignment:
18 ttgataaccttgatagtatgcacaaattcaaattgacaataaacattaaagtttttatgttttagcttttgtttgtgatagtgggtaacggtctacaaga 117  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
750093 ttgataaccttgatagtatgcacaaattcaaattgacaataaccattaaagtttttatgttttagcttttgtttgtgatagtgggtaacggtctacaaga 749994  T
118 taactgattattcttgttgaatgattaatgtgaaaatgaaagttttgaatattttggtattttatttgcgagggttttaaagttgtgaaaatgatattat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
749993 taactgattattcttgttgaatgattaatgtgaaaatgaaagttttgaatattttggtattttatttgcgagggttttaaagttgtgaaaatgatattat 749894  T
218 tgaattcttcttacacacacgtaacacattgtacaattcataacat-------------tggatatgattgatatagtgcctgagattgtagtgaatttt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||    
749893 tgaattcttcttacacacacgtaacacattgtacaattcataacattggtgaaatgacgtggatatgattgatatagtgcctgagattgtagtgaatttt 749794  T
305 gtttccacatgtgttgcattatattgtctcaatattttaa-ttttgcgtgcacctcaagcttcaaaatagacttataacttcatagttgaaatgtctctt 403  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
749793 gtttccacatgtgttgccttatattgtctcaatattttaatttttgtgtgcacctcaagcttcaaaatagacttataacttcgtagttgaaatgtctctt 749694  T
404 tttcaggttggtcgtgtttgttcatttcaatagaagggtaattcactagctggcttaattgc 465  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
749693 tttcaggttggtcgtgtttgttcatttcaatagaagggtaattcactagctggcttaattgc 749632  T

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Target: chr3; HSP #2
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 27 - 465
Target Start/End: Complemental strand, 675485 - 675036
Alignment:
27 ttgatagtatgcacaaattcaaattgacaataaacattaaagtttttatgttttagcttttgtttgtgatagtgggtaacggtctacaagataactgatt 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
675485 ttgatagtatgcacaaattcaaattgacaataaacattaaagtttttatgttttagcttttgtttgtgatagtgggtaacagtctacaagataactgatt 675386  T
127 attcttgttgaatgattaatgtgaaaatgaaagttttgaatattttggtattttatttgcgagggttttaaagttgtgaaaatgatattattgaattctt 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |    
675385 attcttgttgaatgattaatgtgaaaatgaaagttttgaatattttggtattttatttgcgagggttttaaagttgtgaaaatgatattattgaat---t 675289  T
227 cttacacacacgtaacacattgtacaattcataacat-------------tggatatgattgatatagtgcctgagattgtagtgaattttgtttccaca 313  Q
    |||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||    
675288 cttacacacacgtaacacattgtacaattcataacattggtgaaatgacgtggatatgattgatatagtgcctgagattgtagtgaattttgtttccaca 675189  T
314 tgtgttgcattatattgtctcaatattttaa-ttttgcgtgcacctcaagcttcaaaatagacttataacttcatagttgaaatgtctctttttcaggtt 412  Q
    |||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
675188 tgtgttgccttatattgtctcaatattttaatttttgtgtgcacctcaagcttcaaaatagacttataacttcgtagttgaaatgtctctttttcaggtt 675089  T
413 ggtcgtgtttgttcatttcaatagaagggtaattcactagctggcttaattgc 465  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
675088 ggtcgtgtttgttcatttcaatagaagggtaattcactagctggcttaattgc 675036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 142 - 465
Target Start/End: Original strand, 2634006 - 2634332
Alignment:
142 ttaatgtgaaaatgaaagttttgaatattttggtattttatttgcgagggttttaaagttgtgaaaatgatattattgaattcttcttacacacacgtaa 241  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||  ||| |||      |   |||||||||||||||||||||   |||  ||||| |    
2634006 ttaatgtgaaaatgaaagttttgtatattt-ggtattttatttgcagggggttt------gcttaaatgatattattgaattctt---acatgcacgtca 2634095  T
242 cacattgtacaattcataacattgg-------------atatgattgatatagtgcctgagattgtagtgaattttgtttccacatgtgttgcattatat 328  Q
    |||||||||||||||||||||||||             |||| ||||||||| |  ||||||||||| |||| ||  |||||| ||||||||| |||||     
2634096 cacattgtacaattcataacattggtgaaatgacctgaatataattgatataatttctgagattgtattgaagttcatttccatatgtgttgccttataa 2634195  T
329 tgtctcaatattttaattttgcgtgcacctcaagcttcaaaatagacttataacttcatagttgaaatgtctctttttcaggttggtcgtgtttgttcat 428  Q
    ||||||||||||||||||||   |||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||| |||| |||||||||| |    
2634196 tgtctcaatattttaatttttattgcacctcaagcctcaaaatagacttataacatcatagttcaaatgtctctttttcaggctggttgtgtttgttcgt 2634295  T
429 ttcaatagaagggtaattcactagctggcttaattgc 465  Q
    |||||||||||||| |||| ||| |||||| ||||||    
2634296 ttcaatagaagggttattctctatctggctgaattgc 2634332  T

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Target: chr3; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 267 - 463
Target Start/End: Original strand, 2495705 - 2495906
Alignment:
267 atatgattgatatagtgcctgagattgtagtgaattttgtttccacatgtgt-----tgcattatattgtctcaatattttaattttgcgtgcacctcaa 361  Q
    ||||||||||||||||| |||||||||||  ||| ||  |||||| ||||||     ||| ||||| |||||||||||||| |||||   ||||||| ||    
2495705 atatgattgatatagtgtctgagattgtaaggaagttcatttccatatgtgtgtgtttgccttataatgtctcaatatttttattttaattgcacctgaa 2495804  T
362 gcttcaaaatagacttataacttcatagttgaaatgtctctttttcaggttggtcgtgtttgttcatttcaatagaagggtaattcactagctggcttaa 461  Q
    || |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| | || || ||||||| ||    
2495805 gcctcaaaatagacttataacatcatagttgaaatgtctctttttcaggttggttgtgtttgttcctttcaatagaagggttactcgctggctggctgaa 2495904  T
462 tt 463  Q
    ||    
2495905 tt 2495906  T

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Target: chr3; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 376 - 465
Target Start/End: Complemental strand, 9564474 - 9564385
Alignment:
376 ttataacttcatagttgaaatgtctctttttcaggttggtcgtgtttgttcatttcaatagaagggtaattcactagctggcttaattgc 465  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||    
9564474 ttataacgtcatagttgaaatgtctctttttcaggttggtcgtgtttgttcatttcattagaagggttattcactagctggctgaattgc 9564385  T

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Target: chr3; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 314 - 449
Target Start/End: Original strand, 2504152 - 2504286
Alignment:
314 tgtgttgcattatattgtctcaatattttaattttgcgtgcacctcaagcttcaaaatagac-ttataacttcatagttgaaatgtctctttttcaggtt 412  Q
    |||||||| ||||| ||||||||||||||||||||  |||||||| |||| |||||||| || ||||||| |  |||||||||||||||  |||||||||    
2504152 tgtgttgccttataatgtctcaatattttaattttaggtgcaccttaagcctcaaaatacactttataacatattagttgaaatgtctc--tttcaggtt 2504249  T
413 ggtcgtgtttgttcatttcaatagaagggtaattcac 449  Q
    ||  |||||||||  ||||||||||||||| ||||||    
2504250 ggctgtgtttgtttgtttcaatagaagggttattcac 2504286  T

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Target: chr3; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 267 - 438
Target Start/End: Complemental strand, 7332004 - 7331830
Alignment:
267 atatgattgatatagtgcctgagattgtagtgaattttgtttccacatgtgt--tgcattatattgtctcaatattttaattttgcgtgcacctcaagct 364  Q
    ||||||||||||||||| |||||||||||||||| ||  |||||| ||||||  ||  ||||  |||||||||||| |||||||   ||||||| ||||     
7332004 atatgattgatatagtgtctgagattgtagtgaagttcctttccatatgtgtgttgtcttatgatgtctcaatattataattttaattgcaccttaagcc 7331905  T
365 tcaaaatagact-tataacttcatagttgaaatgtctctttttcaggttggtcgtgtttgttcatttcaatagaa 438  Q
    || |||||  |  |||||||| ||||||| |||||||||||||||||||||  |||||||||  |||||||||||    
7331904 tcgaaatactccgtataacttaatagttggaatgtctctttttcaggttggctgtgtttgtttgtttcaatagaa 7331830  T

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Target: chr3; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 29 - 172
Target Start/End: Original strand, 2485112 - 2485259
Alignment:
29 gatagtatgcacaaattcaaattgacaataaacat---taaagtttttatgttttagct-tttgtttgtgatagtgggtaacggtctacaagataactga 124  Q
    |||||||| |||||||||||||||||||||| | |   || ||||||| ||||||| || |||  || ||||||||  ||| ||  ||||||||||||||    
2485112 gatagtattcacaaattcaaattgacaataaccttggctacagtttttttgttttatctctttccttttgatagtgtttaatggattacaagataactga 2485211  T
125 ttattcttgttgaatgattaatgtgaaaatgaaagttttgaatatttt 172  Q
    |||||||||||||||| ||||||  ||||||||||||||| |||||||    
2485212 ttattcttgttgaatgtttaatgcaaaaatgaaagttttgtatatttt 2485259  T

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Target: chr3; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 352 - 425
Target Start/End: Original strand, 2447037 - 2447109
Alignment:
352 tgcacctcaagcttcaaaatagacttataacttcatagttgaaatgtctctttttcaggttggtcgtgtttgtt 425  Q
    ||||||| |||| |||||||||||||||||| |||||||||||||| ||| ||||||||||||| |||||||||    
2447037 tgcacctgaagcctcaaaatagacttataacatcatagttgaaatgcctc-ttttcaggttggttgtgtttgtt 2447109  T

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Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 119 - 203
Target Start/End: Original strand, 2495517 - 2495597
Alignment:
119 aactgattattcttgttgaatgattaatgtgaaaatgaaagttttgaatattttggtattttatttgcgagggttttaaagttgt 203  Q
    |||||||||||||||   ||||||||||||||||| |||||||||| ||||||| |  |||||||||| || |||||||||||||    
2495517 aactgattattcttg---aatgattaatgtgaaaacgaaagttttgtatattttagacttttatttgc-agtgttttaaagttgt 2495597  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 448
Target Start/End: Complemental strand, 2641633 - 2641571
Alignment:
386 atagttgaaatgtctctttttcaggttggtcgtgtttgttcatttcaatagaagggtaattca 448  Q
    ||||||| |||||||||||||||||||||  |||||||||  ||||||| ||||||| |||||    
2641633 atagttggaatgtctctttttcaggttggctgtgtttgtttgtttcaatggaagggttattca 2641571  T

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Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 448
Target Start/End: Complemental strand, 2649126 - 2649064
Alignment:
386 atagttgaaatgtctctttttcaggttggtcgtgtttgttcatttcaatagaagggtaattca 448  Q
    ||||||| |||||||||||||||||||||  |||||||||  ||||||| ||||||| |||||    
2649126 atagttggaatgtctctttttcaggttggctgtgtttgtttgtttcaatggaagggttattca 2649064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 2641951 - 2641879
Alignment:
112 acaagataactgattattcttgttgaatgattaatgtgaaaatgaaagttttgaatattttggtattttatttgc 186  Q
    |||||||||| | || ||||||||||||||||||| ||||||||||  ||||  |||||||||| ||| ||||||    
2641951 acaagataacggtttcttcttgttgaatgattaatctgaaaatgaa--ttttttatattttggtgtttcatttgc 2641879  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 2649444 - 2649372
Alignment:
112 acaagataactgattattcttgttgaatgattaatgtgaaaatgaaagttttgaatattttggtattttatttgc 186  Q
    |||||||||| | || ||||||||||||||||||| ||||||||||  ||||  |||||||||| ||| ||||||    
2649444 acaagataacggtttcttcttgttgaatgattaatctgaaaatgaa--ttttttatattttggtgtttcatttgc 2649372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 447
Target Start/End: Original strand, 2485414 - 2485472
Alignment:
389 gttgaaatgtctctttttcaggttggtcgtgtttgttcatttcaatagaagggtaattc 447  Q
    ||||||||||| ||||||||||||| | |||||||||| ||||| | ||||||| ||||    
2485414 gttgaaatgtcactttttcaggttgattgtgtttgttcgtttcagttgaagggttattc 2485472  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 56
Target Start/End: Complemental strand, 7332301 - 7332267
Alignment:
22 taaccttgatagtatgcacaaattcaaattgacaa 56  Q
    ||||||||||||||||||| |||||||||||||||    
7332301 taaccttgatagtatgcactaattcaaattgacaa 7332267  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 266
Target Start/End: Complemental strand, 7332059 - 7332018
Alignment:
225 ttcttacacacacgtaacacattgtacaattcataacattgg 266  Q
    |||||||||||||| |||||||||||| ||||||||| ||||    
7332059 ttcttacacacacgcaacacattgtacgattcataactttgg 7332018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 7332198 - 7332157
Alignment:
114 aagataactgattattcttgttgaatgattaatgtgaaaatg 155  Q
    |||||||||| ||||||||||| |||||||||| ||||||||    
7332198 aagataactgtttattcttgttaaatgattaatctgaaaatg 7332157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 199 - 465
Target Start/End: Original strand, 2296 - 2572
Alignment:
199 gttgtgaaaatgatattattgaattcttcttacacacacgtaacacattgtacaattcataacattgg-------------atatgattgatatagtgcc 285  Q
    |||||| |||||||||||||||||||||   ||||||| | |||||| ||||||||||||||||||||             |||| |||||| || || |    
2296 gttgtgtaaatgatattattgaattctt---acacacatgcaacacagtgtacaattcataacattggtaaaatgacctgaatataattgatttattgtc 2392  T
286 tgagattgtagtgaattttgtttccacatgtgttgcattatattgtctcaatattttaattttgcgtgcacctcaagcttcaaaatagacttataacttc 385  Q
    | ||||| ||||||| ||  |||||| || |||||| ||| | ||||||||||||||||| ||   |||||||||| | |||||||||||||||||| ||    
2393 ttagattatagtgaagttcatttccatatatgttgccttacaatgtctcaatattttaatatttattgcacctcaatcctcaaaatagacttataacgtc 2492  T
386 atagttgaaatgtctctttttcaggttggtcgtgtttgttcatttcaatagaagggtaattcactagctggcttaattgc 465  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||| |||||||||| ||||||    
2493 atagttgaaatgtctctttttcaggttggttgtgtttgttcgtttcaatagaagggttattctctagctggctgaattgc 2572  T

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Target: scaffold0019; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 2081 - 2270
Alignment:
18 ttgataaccttgatagtatgcacaaattcaaattgacaataaacat--taaagttttt-atgttttagcttttgtttgt-gatagtgggtaacggtctac 113  Q
    ||||||||| |||||||||||||| |||||| || ||||| | |||  ||  |||||| ||||||||||| ||| || | |||||||  ||| ||  |||    
2081 ttgataaccctgatagtatgcacagattcaagttaacaatgatcatcttatggttttttatgttttagctcttgcttcttgatagtgtttaatggattac 2180  T
114 aagataactgattattcttgttgaatgattaatgtgaaaatgaaagttttgaatattttggtattttatttgcgagggttttaaagttgt 203  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||| ||||||||||||||||    
2181 aagataactgattattcttgttgaatgattaatgtcaaaatgaaagttttgtatattttggtcttttatttgcaagggttttaaagttgt 2270  T

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